Jatropha Genome Database

JcCA0074091.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0074091.20 + phase: 0 /pseudo
         (763 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29806.m000948 ATP-binding cassette transporter, putative              151   7e-36
29806.m000945 ATP-binding cassette transporter, putative              123   2e-27
29772.m000319 ATP-binding cassette transporter, putative               80   2e-14

>29806.m000948 ATP-binding cassette transporter, putative
          Length = 2106

 Score =  151 bits (76), Expect = 7e-36
 Identities = 225/272 (82%), Gaps = 2/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 440 taacagttggagaagctgtgtactactcagctcagcttcagctacccaattcaatgtcaa 499
           |||| ||| ||||||| ||  ||||||| |||||||||||| ||||  | |||||||| |
Sbjct: 488 taacggttagagaagcggtacactactcggctcagcttcagttaccagactcaatgtcga 547

                                                                       
Query: 500 tggcagagaaaaaggaaagagcagaaataactataaaagagatgggtttacaagactcca 559
            | || | || || |||||||||||||| || ||| |||| |||||||||||||||||||
Sbjct: 548 agtcaaaaaagaaagaaagagcagaaatgacaatacaagaaatgggtttacaagactcca 607

                                                                       
Query: 560 tggacacaacaataggaggttggggcagcaaaggcctta-gtggtggtcaaaaaagaaga 618
            ||| |||| ||| ||||| ||||| ||| ||||  ||| ||||||| ||||  ||||||
Sbjct: 608 cggaaacaagaattggaggatgggg-agccaagggattaagtggtggccaaaggagaaga 666

                                                                       
Query: 619 gtgagcatttgtattgagattttaacaaggcctaagcttctttttctcgatgaaccaaca 678
           || ||||||||||| ||||| |||||  | || | |||||| ||||| ||||||||||| 
Sbjct: 667 gttagcatttgtatagagatgttaacccgtccaaggcttctgtttcttgatgaaccaacc 726

                                           
Query: 679 agtgggcttgatagtgcagcttcctattatgt 710
           ||||||||||||||||||||||| | ||||||
Sbjct: 727 agtgggcttgatagtgcagcttcattttatgt 758


>29806.m000945 ATP-binding cassette transporter, putative
          Length = 1473

 Score =  123 bits (62), Expect = 2e-27
 Identities = 83/90 (92%)
 Strand = Plus / Plus

                                                                       
Query: 246 tgcccaacctggagaaatcttggcagtcatgggtccttctggctctggcaaaacttctct 305
           ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||
Sbjct: 222 tgcccaacctggagaaatcttggcaatcatgggtccttcaggctgtggcaaaactactct 281

                                         
Query: 306 tcttgatgctttggctgggagattggattc 335
           |||||| ||||||||||| ||||| |||||
Sbjct: 282 tcttgacgctttggctggaagattagattc 311


>29772.m000319 ATP-binding cassette transporter, putative
          Length = 2139

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                       
Query: 589 aaaggccttagtggtggtcaaaaaagaagagtgagcatttgtattgagattttaacaagg 648
           ||||| ||||||||||| |||||||||||||| |||||||| |||||||| || || || 
Sbjct: 733 aaaggacttagtggtggacaaaaaagaagagttagcatttgcattgagatcttgactaga 792

                                                                       
Query: 649 cctaagcttctttttctcgatgaaccaacaagtgggcttgatagtgcagcttcctattat 708
           || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||| ||
Sbjct: 793 cccaaacttttgtttcttgatgagcctactagtggactggatagtgcagcatcttatcat 852

                   
Query: 709 gtaatgaa 716
           || |||||
Sbjct: 853 gtcatgaa 860