Jatropha Genome Database
- JcCA0071981.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0071981.10 + phase: 0 /pseudo/partial
(750 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29681.m001324 60S acidic ribosomal protein P0, putative 299 1e-80
29669.m000815 60S acidic ribosomal protein P0, putative 196 1e-49
>29681.m001324 60S acidic ribosomal protein P0, putative
Length = 972
Score = 299 bits (151), Expect = 1e-80
Identities = 430/523 (82%)
Strand = Plus / Plus
Query: 119 aggtgggagctcctgcacgtgttggcctcattgcaccaattgatgttgttgtccctcctg 178
|||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||| ||||
Sbjct: 326 aggtcggagcacctgctcgtgtgggtctcattgctccaattgatgttgttgtcccacctg 385
Query: 179 gacctactggactcgatccctctatgacatctttctttcaggctttgaacataccaacca 238
| |||||||| |||||||| |||||| |||||||||| ||||||| |||||||
Sbjct: 386 ggaacactggactggatccctcccagacatccttctttcaggtgctgaacatcccaacca 445
Query: 239 agattaacaaaggttctgtggaaatcgttactgctgttgatctaattaagaagggtgaaa 298
||||||||||||| ||||||||||| |||| |||| ||| | |||||||||||||| |
Sbjct: 446 agattaacaaaggaactgtggaaatcattacccctgtagatatcattaagaagggtgaga 505
Query: 299 aagtgggctcatctgagtctgctcttctggcgaagcttcagatacgaccattctcttatg 358
| |||||||| || |||||||||||||| || |||||| |||||||||||||| ||||
Sbjct: 506 aggtgggctcgtcagagtctgctcttctcgcaaagcttggcatacgaccattctcatatg 565
Query: 359 gtcttattgtcttctctgtttatgacaatggatcagttttcagccctgaggttcttgatc 418
| ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 566 gccttgttgtgcttactgtttatgacagtggatcagttttcagccctgaggttcttgatc 625
Query: 419 tcacagaggatgatcttgtggagaggtttgttaatggtgtatcgatggtcacatcgctat 478
||||||| |||||||| |||| | |||| ||| ||||| ||||| | || || |
Sbjct: 626 tcacagacgatgatctcgtggctaaatttgcatctggggtatccatggttgcctctctgt 685
Query: 479 ctctgtctatatcgttcccaacacttgcagctgcaccccatatgttcttgaatgcgtaca 538
|| |||| | || ||||||||| | || |||||||| ||||||||| |||||| ||||
Sbjct: 686 ctttgtccctttcattcccaacaatcgctgctgcacctcatatgttcgtgaatggataca 745
Query: 539 agaatgttctttctgtttcagtggcaactgaatatactttcccgcaggcagagcaagtta 598
|||||||||| ||||| || ||| | ||||| | ||||| ||||||||| |||| |
Sbjct: 746 agaatgttctatctgtagcaatggtttcagaatactccttcccacaggcagagaaagtga 805
Query: 599 aagaattcttggaggatccaagcaaatttgcagctgttgcagc 641
|||||| | | |||||||||||||||||||||||| ||||||
Sbjct: 806 aagaatacctcaaggatccaagcaaatttgcagctgctgcagc 848
Score = 52.0 bits (26), Expect = 5e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 661 gctggtgctgctgcagccaaggtggaagaaaagaaaga 698
||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 886 gctggtgctgccgcagccaaggtggaagagaaggaaga 923
>29669.m000815 60S acidic ribosomal protein P0, putative
Length = 963
Score = 196 bits (99), Expect = 1e-49
Identities = 408/511 (79%)
Strand = Plus / Plus
Query: 119 aggtgggagctcctgcacgtgttggcctcattgcaccaattgatgttgttgtccctcctg 178
|||| ||||||||||| |||||||| | |||| |||||||||||||||||||||||||
Sbjct: 326 aggttggagctcctgctcgtgttggtttggttgccccaattgatgttgttgtccctcctg 385
Query: 179 gacctactggactcgatccctctatgacatctttctttcaggctttgaacataccaacca 238
| ||| || ||||| |||||| ||| |||||||| |||| | ||||| || ||||
Sbjct: 386 gcaatacagggctcgacccctctcagacctctttcttccaggtgcttaacattcctacca 445
Query: 239 agattaacaaaggttctgtggaaatcgttactgctgttgatctaattaagaagggtgaaa 298
|||||||||| ||| |||| ||||| | || |||| || || || ||||||||||| |
Sbjct: 446 agattaacaagggtactgttgaaattatcacccctgtggagctgatcaagaagggtgata 505
Query: 299 aagtgggctcatctgagtctgctcttctggcgaagcttcagatacgaccattctcttatg 358
| || ||||| |||||| ||||||||||||| |||||| ||| | |||||||| ||||
Sbjct: 506 aggttggctcttctgaggctgctcttctggcaaagcttggtataaggccattctcatatg 565
Query: 359 gtcttattgtcttctctgtttatgacaatggatcagttttcagccctgaggttcttgatc 418
|||||||||| || ||||||||||| ||||| || || |||||||| |||||||||||||
Sbjct: 566 gtcttattgtattgtctgtttatgataatggctctgtcttcagcccagaggttcttgatc 625
Query: 419 tcacagaggatgatcttgtggagaggtttgttaatggtgtatcgatggtcacatcgctat 478
| || ||||||||||| | | | ||||| || |||||| || |||||||| || |
Sbjct: 626 tgactgaggatgatctcattggcaagtttgctattggtgtctccatggtcacctcattgg 685
Query: 479 ctctgtctatatcgttcccaacacttgcagctgcaccccatatgttcttgaatgcgtaca 538
| || | || || | ||||| ||||| |||||||| || |||||| | ||||| ||||
Sbjct: 686 ccttggccatctcatatccaacccttgctgctgcaccacacatgttcatcaatgcctaca 745
Query: 539 agaatgttctttctgtttcagtggcaactgaatatactttcccgcaggcagagcaagtta 598
|||||| |||| || || |||| |||||||| ||||| ||||| ||||||||| |||| |
Sbjct: 746 agaatgctcttgctattgcagttgcaactgagtataccttcccacaggcagagaaagtca 805
Query: 599 aagaattcttggaggatccaagcaaatttgc 629
| || | | | |||||||| ||||| |||||
Sbjct: 806 aggagtaccttgaggatcctagcaagtttgc 836