Jatropha Genome Database
- JcCA0070351.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0070351.10 - phase: 0 /pseudo/partial
(1534 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30169.m006276 Casbene synthase, chloroplast precursor, putative 115 8e-25
30169.m006286 Casbene synthase, chloroplast precursor, putative 100 5e-20
30169.m006283 Casbene synthase, chloroplast precursor 96 8e-19
30065.m001152 Casbene synthase, chloroplast precursor, putative 56 6e-07
>30169.m006276 Casbene synthase, chloroplast precursor, putative
Length = 1845
Score = 115 bits (58), Expect = 8e-25
Identities = 261/329 (79%), Gaps = 6/329 (1%)
Strand = Plus / Plus
Query: 214 gatctctacactgttgcggtaatatttcgggtgtttagacaacacggtttcaaaatctct 273
|||||||| |||||||| | ||||||| || || ||||| || ||||||||||| |||
Sbjct: 463 gatctctatactgttgcacttgtatttcgagttttcagacagcatggtttcaaaatgtct 522
Query: 274 tctgatgtgttcaacaagttcaaggatagtgatggtaagttcaaggagtccctactaagt 333
||| |||||||| |||| |||| ||| || ||||||| ||||||| ||||| |||||
Sbjct: 523 tctaatgtgttccacaaattcacggacagccatggtaaattcaaggcttccctgctaagc 582
Query: 334 gatgtcaaagggatactaagcctttttgaagctacacatctgagcatgcctaatgaatcc 393
|||| |||||| || || |||||||||||||||| ||| | ||||||| | ||| |
Sbjct: 583 gatgccaaaggtatgctcagcctttttgaagctagccatttaagcatgcatggagaagac 642
Query: 394 attttagatgaggccttagctttcactaaggctttcttggagttctctgcggttg----- 448
||| | ||||| ||||| |||||||| |||| || |||||||| |||||| ||||
Sbjct: 643 attcttgatgaagcctttgctttcaccaaggattacttggagtcctctgcagttgaccag 702
Query: 449 -agtcattccctgattttgcaaagcatataaccattgccctagagcagcctgtacacaaa 507
| | || |||| || || |||||||||||| | ||||| ||||||||| | ||||||
Sbjct: 703 tacttatgccctaatcttcaaaagcatataactaacgccctggagcagcctttccacaaa 762
Query: 508 ggcataccaaggctagaggcaagaaaata 536
||||||||||| |||||||| || |||||
Sbjct: 763 ggcataccaagactagaggccaggaaata 791
Score = 115 bits (58), Expect = 8e-25
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 1196 tgaatgatgtaatgtctcatgagactgagcaaaatagaggacatgttgcttcttgcatcg 1255
||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct: 1490 tgaatgacataatgtctcatgtgagcgagcaaaatagaggacatgttgcatcttgcatag 1549
Query: 1256 attgctatatgaaccaatatggagtttccaaagagaaggcaatggaagagatccagaaaa 1315
||||||| ||||| ||||||| ||||||||| ||| | ||||| ||||||| |||||||
Sbjct: 1550 attgctacatgaaacaatatgaagtttccaaggaggaagcaattaaagagatgcagaaaa 1609
Query: 1316 tagcta 1321
| ||||
Sbjct: 1610 tggcta 1615
Score = 95.6 bits (48), Expect = 8e-19
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 641 ttccttatgcaagaaatagaatggcggaaatcttcttttggacagtttctatgtattttg 700
|||||||||||||| | |||||||| ||||| ||||||||| | ||| | ||||||||||
Sbjct: 938 ttccttatgcaagagacagaatggcagaaattttcttttgggctgttgcaatgtattttg 997
Query: 701 aacctcaatatgcaaaggctagaatgattgtttccaaagttgtattgtttatctcattaa 760
| ||| | |||||| | ||| |||||||| || | |||||||||||| | || ||| |
Sbjct: 998 agcctaagtatgcacaagctcgaatgattattgctaaagttgtattgctcatatcacttg 1057
Query: 761 tagatgacacaattgatgcatatgccac 788
||||||| ||| ||||||||||||||||
Sbjct: 1058 tagatgatacatttgatgcatatgccac 1085
>30169.m006286 Casbene synthase, chloroplast precursor, putative
Length = 1800
Score = 99.6 bits (50), Expect = 5e-20
Identities = 239/302 (79%)
Strand = Plus / Plus
Query: 250 agacaacacggtttcaaaatctcttctgatgtgttcaacaagttcaaggatagtgatggt 309
||||| || ||||| ||||| |||||||||||||| | ||| |||||||| |||||||||
Sbjct: 499 agacagcatggttttaaaatgtcttctgatgtgtttagcaaattcaaggacagtgatggt 558
Query: 310 aagttcaaggagtccctactaagtgatgtcaaagggatactaagcctttttgaagctaca 369
||||||||||| ||||||| |||||| || || || || ||||||||||||||| |
Sbjct: 559 aagttcaaggaatccctacggggtgatgctaagggtatgctcagcctttttgaagcttcc 618
Query: 370 catctgagcatgcctaatgaatccattttagatgaggccttagctttcactaaggctttc 429
||||| || ||| | ||| |||| | || || ||||| |||||||| |||| || |
Sbjct: 619 catctaagtgtgcatggagaagacattcttgaagaagcctttgctttcaccaaggattac 678
Query: 430 ttggagttctctgcggttgagtcattccctgattttgcaaagcatataaccattgcccta 489
|| ||| |||||| ||||||| ||||||| || | || ||||||||| | ||||||
Sbjct: 679 ttacagtcctctgcagttgagttattccctaatctcaaaaggcatataacgaacgcccta 738
Query: 490 gagcagcctgtacacaaaggcataccaaggctagaggcaagaaaatatatcgatttatac 549
||||||||| | |||| ||| | || ||||||||||| || |||| |||||| |||||
Sbjct: 739 gagcagcctttccacagtggcgtgccgaggctagaggccaggaaattcatcgatctatac 798
Query: 550 ga 551
||
Sbjct: 799 ga 800
Score = 95.6 bits (48), Expect = 8e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1210 tctcatgagactgagcaaaatagaggacatgttgcttcttgcatcgattgctatatgaac 1269
||||||| |||||| ||| | |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 1501 tctcatgtgactgaacaacaaagaggacacgttgcatcttgcatcgactgctatatgaac 1560
Query: 1270 caatatggagtttccaaaga 1289
||| ||||||||||||||||
Sbjct: 1561 caacatggagtttccaaaga 1580
Score = 83.8 bits (42), Expect = 3e-15
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 906 tgaatttgaaaaagatttggaggcagaaggaaagtcttacagcatcaagtacggaaggga 965
|||||| || ||||| ||| ||| ||||| ||||| |||||| |||| |||||||||||
Sbjct: 1197 tgaattcgagaaagaattgacggcggaaggcaagtcctacagcgtcaaatacggaaggga 1256
Query: 966 agcgtttcaagaactagtgcgagcgtattaccaggaggctctatgg 1011
||||||||||||||||||| ||| || |||| ||||||| |||||
Sbjct: 1257 agcgtttcaagaactagtgagaggttactacctggaggctgtatgg 1302
Score = 73.8 bits (37), Expect = 3e-12
Identities = 118/145 (81%)
Strand = Plus / Plus
Query: 641 ttccttatgcaagaaatagaatggcggaaatcttcttttggacagtttctatgtattttg 700
|||||||||||||| | |||||||| || || ||||||||| |||| | ||||| ||||
Sbjct: 935 ttccttatgcaagagacagaatggcagagattttcttttgggcagtcgcgatgtactttg 994
Query: 701 aacctcaatatgcaaaggctagaatgattgtttccaaagttgtattgtttatctcattaa 760
| ||| | |||||| | | |||||||| || | || ||||||||| |||| ||| |||
Sbjct: 995 agcctgactatgcacacacccgaatgattattgcgaaggttgtattgcttatatcactaa 1054
Query: 761 tagatgacacaattgatgcatatgc 785
||||||| ||||||||||| |||||
Sbjct: 1055 tagatgatacaattgatgcgtatgc 1079
>30169.m006283 Casbene synthase, chloroplast precursor
Length = 1806
Score = 95.6 bits (48), Expect = 8e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1210 tctcatgagactgagcaaaatagaggacatgttgcttcttgcatcgattgctatatgaac 1269
||||||| |||||| ||| | |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 1507 tctcatgtgactgaacaacaaagaggacacgttgcatcttgcatcgactgctatatgaac 1566
Query: 1270 caatatggagtttccaaaga 1289
||| ||||||||||||||||
Sbjct: 1567 caacatggagtttccaaaga 1586
Score = 91.7 bits (46), Expect = 1e-17
Identities = 238/302 (78%)
Strand = Plus / Plus
Query: 250 agacaacacggtttcaaaatctcttctgatgtgttcaacaagttcaaggatagtgatggt 309
||||| || ||||| ||||| ||||| |||||||| | ||| |||||||| |||||||||
Sbjct: 505 agacagcatggttttaaaatgtcttcggatgtgtttagcaaattcaaggacagtgatggt 564
Query: 310 aagttcaaggagtccctactaagtgatgtcaaagggatactaagcctttttgaagctaca 369
||||||||||| ||||||| |||||| || || || || ||||||||||||||| |
Sbjct: 565 aagttcaaggaatccctacggggtgatgctaagggtatgctcagcctttttgaagcttcc 624
Query: 370 catctgagcatgcctaatgaatccattttagatgaggccttagctttcactaaggctttc 429
||||| || ||| | ||| |||| | || || ||||| |||||||| |||| || |
Sbjct: 625 catctaagtgtgcatggagaagacattcttgaagaagcctttgctttcaccaaggattac 684
Query: 430 ttggagttctctgcggttgagtcattccctgattttgcaaagcatataaccattgcccta 489
|| ||| |||||| ||||||| ||||||| || | || ||||||||| | ||||||
Sbjct: 685 ttacagtcctctgcagttgagttattccctaatctcaaaaggcatataacgaacgcccta 744
Query: 490 gagcagcctgtacacaaaggcataccaaggctagaggcaagaaaatatatcgatttatac 549
||||||||| | |||| ||| | || ||||||||||| || |||| |||||| |||||
Sbjct: 745 gagcagcctttccacagtggcgtgccgaggctagaggccaggaaattcatcgatctatac 804
Query: 550 ga 551
||
Sbjct: 805 ga 806
Score = 83.8 bits (42), Expect = 3e-15
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 906 tgaatttgaaaaagatttggaggcagaaggaaagtcttacagcatcaagtacggaaggga 965
|||||| || ||||| ||| ||| ||||| ||||| |||||| |||| |||||||||||
Sbjct: 1203 tgaattcgagaaagaattgacggcggaaggcaagtcctacagcgtcaaatacggaaggga 1262
Query: 966 agcgtttcaagaactagtgcgagcgtattaccaggaggctctatgg 1011
||||||||||||||||||| ||| || |||| ||||||| |||||
Sbjct: 1263 agcgtttcaagaactagtgagaggttactacctggaggctgtatgg 1308
Score = 73.8 bits (37), Expect = 3e-12
Identities = 118/145 (81%)
Strand = Plus / Plus
Query: 641 ttccttatgcaagaaatagaatggcggaaatcttcttttggacagtttctatgtattttg 700
|||||||||||||| | |||||||| || || ||||||||| |||| | ||||| ||||
Sbjct: 941 ttccttatgcaagagacagaatggcagagattttcttttgggcagtcgcgatgtactttg 1000
Query: 701 aacctcaatatgcaaaggctagaatgattgtttccaaagttgtattgtttatctcattaa 760
| ||| | |||||| | | |||||||| || | || ||||||||| |||| ||| |||
Sbjct: 1001 agcctgactatgcacacacccgaatgattattgcgaaggttgtattgcttatatcactaa 1060
Query: 761 tagatgacacaattgatgcatatgc 785
||||||| ||||||||||| |||||
Sbjct: 1061 tagatgatacaattgatgcgtatgc 1085
>30065.m001152 Casbene synthase, chloroplast precursor, putative
Length = 849
Score = 56.0 bits (28), Expect = 6e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1258 tgctatatgaaccaatatggagtttccaaagagaaggcaatggaagagatccagaaaata 1317
|||||||||||||||||||| ||||| || |||| || || |||||||| |||||||||
Sbjct: 595 tgctatatgaaccaatatggtgtttcagaaaagaaagccattgaagagattcagaaaata 654