Jatropha Genome Database
- JcCA0066751.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0066751.30 - phase: 2 /pseudo/partial
(170 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29174.m000010 DNA-directed RNA polymerase beta chain, putative 278 1e-74
29852.m001988 30S ribosomal protein S2, putative 264 1e-70
29923.m000786 DNA-directed RNA polymerase beta chain, putative 161 2e-39
29813.m001454 30S ribosomal protein S2, putative 145 9e-35
>29174.m000010 DNA-directed RNA polymerase beta chain, putative
Length = 1155
Score = 278 bits (140), Expect = 1e-74
Identities = 162/168 (96%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 4 tttttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgct 63
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct: 1028 tttttattaacataatgacaccgagcccttattgcagctcgtgctactgaatccgccgct 969
Query: 64 ttattttttgtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaa 123
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 968 ttatttttggtaccaacaattaagaattgttttctcctacttgctgcatcaaaaactaaa 909
Query: 124 tcacaagcttctgata-aaaacgagcagttctagtaagatttgtaata 170
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 908 tcacaagcttctgataaaaaacgagcagttctagtaagatttgtaata 861
>29852.m001988 30S ribosomal protein S2, putative
Length = 954
Score = 264 bits (133), Expect = 1e-70
Identities = 158/165 (95%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 7 ttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgcttta 66
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct: 545 ttattaacataatgacatcgagcccttattgcagctcgtgctactgaatccgctgcttta 486
Query: 67 ttttttgtaccaacaattaagaattgttttctcctgcttgctgcatcaaaaactaaatca 126
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 485 tttttggtaccaacaattaagaattgttttctcctacttgctgcatcaaaaactaaatca 426
Query: 127 caagcttctgata-aaaacgagcagttctagtaagatttgtaata 170
||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 425 caagcttctgataaaaaatgagcagttctagtaagatttgtaata 381
>29923.m000786 DNA-directed RNA polymerase beta chain, putative
Length = 1083
Score = 161 bits (81), Expect = 2e-39
Identities = 99/105 (94%)
Strand = Plus / Minus
Query: 4 tttttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgct 63
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||
Sbjct: 869 tttttattaacataatgacaccgagcccttattgcagctcgtgctactaaatccgccgct 810
Query: 64 ttattttttgtaccaacaattaagaattgttttctcctgcttgct 108
|||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 809 ttatttttggtaccaacaattaagaattgttttctcctacttgct 765
>29813.m001454 30S ribosomal protein S2, putative
Length = 333
Score = 145 bits (73), Expect = 9e-35
Identities = 97/105 (92%)
Strand = Plus / Minus
Query: 4 tttttattaacataatgacaccgagcccttattgcagcccgcgctactgaatccgctgct 63
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct: 116 tttttattaacataatgacaccgagcccttattgcagctcgtgctactgaatccgccgct 57
Query: 64 ttattttttgtaccaacaattaagaattgttttctcctgcttgct 108
|||||||| |||| ||||||||||||||||||||| | ||||||
Sbjct: 56 ttatttttggtacttacaattaagaattgttttctcttacttgct 12