Jatropha Genome Database
- JcCA0066621.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0066621.20 - phase: 2 /partial
(958 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29912.m005276 replication factor A 1, rfa1, putative 963 0.0
>29912.m005276 replication factor A 1, rfa1, putative
Length = 2013
Score = 963 bits (486), Expect = 0.0
Identities = 828/942 (87%)
Strand = Plus / Plus
Query: 1 gaatgcagaaaacaattccatatttgatgttattggtattgtgacatctgttaatccttc 60
||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct: 1053 gaatgtagaaaacaactccatccttgatgttattggtattgtgatatctgttaatccatc 1112
Query: 61 agttcctatcttgagaaagaatggtatggaaactcagagaagaattctgaatctgaagga 120
|||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||
Sbjct: 1113 agttcctatcttgagaaaaaatggcatggaaactcagagaagaattttgaatcttaagga 1172
Query: 121 tggttctggcaggagtgttgagttgacccttgggggagatttctgcaataaggaaggtca 180
||||||||| |||| ||||| | || ||| |||| ||||||||||| |||||||||||
Sbjct: 1173 tggttctggtaggaacattgagctaactctttggggggatttctgcaacaaggaaggtca 1232
Query: 181 aaagctgcaagaaattgttgattctggggtttttccagttttagctgtcaaagcaggtaa 240
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 1233 gcagctgcaagagattgttgattctggggattttccagttttagctgtcaaagcagggaa 1292
Query: 241 ggttagtgatttcagtggcaaatccttggggacaatctcttcgacacagcttttcatcaa 300
||||||||| |||||||| ||||| | ||||| || ||||| || ||||| ||||| ||
Sbjct: 1293 ggttagtgacttcagtgggaaatcactagggacgatttcttctactcagctcttcattaa 1352
Query: 301 tccagatattcccgaggcctatagtgtgaaggactggtttgatcgaggggggcaaaatgc 360
|||||||||||| ||||| || || |||| |||||||||||||||||||| || || |
Sbjct: 1353 tccagatattcctgaggctcatggtctgaaagactggtttgatcgagggggacagcatac 1412
Query: 361 aacttctgtgtccatttctagagacattatgccaggtgctcccaagaatgagatacgtaa 420
|||||||||||||||| ||||||||| ||||||| | | |||||||||||||||||
Sbjct: 1413 tgcttctgtgtccatttccagagacattttgccaggaggatctaagaatgagatacgtaa 1472
Query: 421 aactgtatctcagatcaaggatgaaggtcttggaagatcagataagccggactgggtcac 480
|||||| ||||| |||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 1473 aactgtgtctcaaatcaagcatgaaggtcttggaagatcagataggccggattgggtcac 1532
Query: 481 agtgagtgcaagaataacttttgtaaagacagatacattctgttatacggcttgcccatt 540
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 1533 agtgagtgcaagaataacttttgtcaagacagatacattctgttatacagcttgcccatt 1592
Query: 541 gatgattggagatagacagtgtaataagaaagtgacaaggtcgggaaactcgagatggca 600
|||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 1593 gatgatcggagatagacagtgtaacaagaaagtgacaagttcaggaaactcgagatggca 1652
Query: 601 atgtgatagatgcaatcaagaatttgatgagtgcgattacaggtatcttcttcaggctca 660
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct: 1653 gtgtgatagatgtaatcaagaatttgatgagtgtgattataggtatcttcttcaagttca 1712
Query: 661 gattcaagaccatacaggaataacatgggtaacagcttttcaggaatcgggggaacagat 720
||||||||||||||||||| | || |||||||||||||||||||| || |||||| ||||
Sbjct: 1713 gattcaagaccatacaggattgacttgggtaacagcttttcaggagtctggggaagagat 1772
Query: 721 attgggttacccagcaaaggaaatgtacttgttgaaaaatgaattgcaggacgaaaccag 780
|||||||| |||||||||||| | ||| |||||| ||||| ||||||| || ||||
Sbjct: 1773 attgggtttaccagcaaaggaattataccagttgaagtatgaaatgcaggatgataccaa 1832
Query: 781 atttgcagatatacttcggagcatactctttgagcagtatctcttcaggcttaagatcaa 840
||| | ||| || | ||||||| ||||||| |||| | ||| |||||||||||||| ||
Sbjct: 1833 attctcggatgtaatccggagcagactctttcagcaatttctgttcaggcttaagataaa 1892
Query: 841 agaggaaatgtatggtgatgaacagagggttaagatcacggttgttaaggcagacaaggt 900
|||||||||||| ||||||||||| ||||| || ||||| |||||||| ||||| |||||
Sbjct: 1893 agaggaaatgtacggtgatgaacaaagggtgaaaatcactgttgttaaagcagaaaaggt 1952
Query: 901 ggactattcttcagagagcagatatctacttgatttgatttc 942
| |||||||||||||| ||||||| | ||||||||||||||
Sbjct: 1953 gaactattcttcagagggcagatacttgcttgatttgatttc 1994