Jatropha Genome Database

JcCA0066621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066621.10 + phase: 2 /partial
         (175 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005277 conserved hypothetical protein                          155   1e-37
29739.m003603 conserved hypothetical protein                           62   1e-09

>29912.m005277 conserved hypothetical protein
          Length = 366

 Score =  155 bits (78), Expect = 1e-37
 Identities = 152/177 (85%), Gaps = 6/177 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   acagcagctgcactgactgcttcaatggtgatgccagatgtggctgaagctgctgaac-- 62
           |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||     
Sbjct: 187 acagcagctgcactcactgcttcaatggtgattccagaggttgctgaagctgctggttct 246

                                                                       
Query: 63  ----tttctccatctctcaagaacttcttgcttagcattgtagctggtggagttgtgctt 118
               ||||||||||||||||||||||||||||||||||||| || ||||| ||||| || 
Sbjct: 247 ggtgtttctccatctctcaagaacttcttgcttagcattgttgccggtggtgttgttctc 306

                                                                    
Query: 119 actgccattgtaggtgctgtgattggtgttgctaatttcgaccctgtcaagcggagc 175
           ||||||||||| |||||| | ||||| || || |||||||||||||| |||||||||
Sbjct: 307 actgccattgttggtgctataattggagtagccaatttcgaccctgtaaagcggagc 363


>29739.m003603 conserved hypothetical protein
          Length = 348

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 67  tccatctctcaagaacttcttgcttagcattgtagctggtggagttgtgcttactgccat 126
           ||||||||||||||| |||||||| ||||| |||||||| || ||||| |||  ||||||
Sbjct: 237 tccatctctcaagaatttcttgctcagcatcgtagctgggggcgttgttcttggtgccat 296

              
Query: 127 tgt 129
           |||
Sbjct: 297 tgt 299