Jatropha Genome Database

JcCA0066101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066101.10 + phase: 1 /partial
         (204 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30142.m000632 Rho GTPase activator, putative                          325   6e-89
29908.m006240 conserved hypothetical protein                           52   1e-06

>30142.m000632 Rho GTPase activator, putative
          Length = 2466

 Score =  325 bits (164), Expect = 6e-89
 Identities = 194/204 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactaaagttgaaggaattttgcgacagtctgctgatgttgaggaggttgaacgcagag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaactaaagtagaaggaattttgcgacagtctgctgatgttgaggaggttgaacgcagag 478

                                                                       
Query: 61  ttcaagaatatgaacaaggaaagtctgaatttgaaccagatgaagatgctcatgttgttg 120
           |||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 479 ttcaagaatacgaacaaggaaagactgattttgaaccagatgaagatgctcatgttgttg 538

                                                                       
Query: 121 gtgattgtgtcaagcatgtcctaagggagctgccctcctctccagttccagcatcttgct 180
            |||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 539 ctgattgtgtcaagcatgtcctaagggagttgccttcctctccagttccggcatcttgct 598

                                   
Query: 181 gcactgcattgctggaggcttata 204
           ||||||||||||| || |||||||
Sbjct: 599 gcactgcattgcttgaagcttata 622


>29908.m006240 conserved hypothetical protein
          Length = 2943

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 102 gaagatgctcatgttgttggtgattgtgtcaagcatgtcctaagggagctgccctcctct 161
           |||||||| |||||  ||| ||||||||||||| || | ||  | ||| |||| ||||||
Sbjct: 784 gaagatgcacatgtgattgctgattgtgtcaagtattttctccgtgagttgccatcctct 843

                                 
Query: 162 ccagttccagcatcttgctgca 183
           ||||| || |||||||||||||
Sbjct: 844 ccagtccctgcatcttgctgca 865