Jatropha Genome Database

JcCA0062081.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0062081.20 + phase: 0 
         (237 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29804.m001536 mads box protein, putative                              170   2e-42
29596.m000699 mads box protein, putative                               66   1e-10

>29804.m001536 mads box protein, putative
          Length = 801

 Score =  170 bits (86), Expect = 2e-42
 Identities = 158/182 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggagagggaagattgtgatccgaagaatcgataattcgacgagtagacaagtgact 60
           ||||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||
Sbjct: 82  atgggaagagggaaaattgtgatccgtaggattgataattcaacgagtaggcaagtgact 141

                                                                       
Query: 61  ttctcgaaaaggagaagtgggttgctaaagaaagctagagagctctcaatcctttgtgat 120
           ||||| || || |||| ||||||||||||||||||||||||| | ||||| ||||| |||
Sbjct: 142 ttctcaaagagaagaaatgggttgctaaagaaagctagagagttgtcaattctttgcgat 201

                                                                       
Query: 121 gctgaagttggagtaattattttctctagcactggcaagctttacgattatgcaagcact 180
           || |||||||| || || || ||||| ||||||  ||||||||| |||||||||||||||
Sbjct: 202 gcagaagttggtgttatcatcttctccagcacttccaagctttatgattatgcaagcact 261

             
Query: 181 ag 182
           ||
Sbjct: 262 ag 263


>29596.m000699 mads box protein, putative
          Length = 789

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 135/169 (79%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggagagggaagattgtgatccgaagaatcgataattcgacgagtagacaagtgact 60
           ||||||||||||||||| |||||  ||||||| || ||||| || || || |||||||| 
Sbjct: 1   atggggagagggaagatagtgataagaagaatagacaattccacaagcaggcaagtgacg 60

                                                                       
Query: 61  ttctcgaaaaggagaagtgggttgctaaagaaagctagagagctctcaatcctttgtgat 120
           || || ||||| || | ||| ||  | ||||| || |  |||||| | || |||||||| 
Sbjct: 61  ttttcaaaaagaaggaatggattattgaagaaggcaaaggagctcgcgattctttgtgac 120

                                                            
Query: 121 gctgaagttggagtaattattttctctagcactggcaagctttacgatt 169
           ||||||||||||||  | || || |||||||| |||||||| |||||||
Sbjct: 121 gctgaagttggagttgtgatattttctagcaccggcaagctctacgatt 169