Jatropha Genome Database

JcCA0060881.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0060881.10 + phase: 0 /partial
         (279 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006006 Endoplasmic reticulum-Golgi intermediate compartme...   309   5e-84

>29908.m006006 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 1161

 Score =  309 bits (156), Expect = 5e-84
 Identities = 207/224 (92%)
 Strand = Plus / Plus

                                                                       
Query: 52  catgctgtaactgaaacaaagcttgtagttgatacttcaagaggagaaactttgcgcatc 111
           ||||||||||||||||||||||||| ||| |||||||| ||||| |||||||| ||||||
Sbjct: 154 catgctgtaactgaaacaaagcttgcagtggatacttcgagaggggaaactttacgcatc 213

                                                                       
Query: 112 aattttgatgtaacttttccagccctaccatgttctattctcagccttgatgccatggac 171
           |||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 214 aattttgacgtcacttttccagcccttccatgttctattctcagccttgatgctatggat 273

                                                                       
Query: 172 atcagtggagagcagcatcttgatgtcaaacacgatataatcaagaaaagactggattct 231
           || ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 274 attagtggagagcaacatcttgatgtgaaacacgatatcatcaagaaaagactggattct 333

                                                       
Query: 232 catggaaatgtaatagaagcacggcaagatggtataggtgctcc 275
           ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 334 catggcaatgtaatagaagcacgccaagatggtattggtgctcc 377