Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0059791.20 + phase: 0 
         (300 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30143.m001198 conserved hypothetical protein                          226   6e-59
29973.m000398 hypothetical protein                                     56   1e-07

>30143.m001198 conserved hypothetical protein
          Length = 630

 Score =  226 bits (114), Expect = 6e-59
 Identities = 237/278 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggattggggaactgtgacggctgaagatctaatgggtgctttaagggaagtagattgg 60
           ||||| |||||||| || || |||||||||||||| ||||||||||||||||| || |||
Sbjct: 1   atggactggggaacagtaacagctgaagatctaatcggtgctttaagggaagttgactgg 60

                                                                       
Query: 61  tctactccacctcgccctctccatgaattcttctctagattcaccatccctcgatcttat 120
           || || ||||| || ||  || ||||||||||||||| |||||| |||||  ||||||| 
Sbjct: 61  tcgacgccaccgcgtccggtcaatgaattcttctctaaattcactatcccaagatcttac 120

                                                                       
Query: 121 cccaagtggaacagccgcttcaagtgcaatctttactactataggaccaactacttcatt 180
           ||||||||| | |||||||||||||||||||| |||||||||||  | ||||| || |||
Sbjct: 121 cccaagtgggatagccgcttcaagtgcaatctctactactatagatcgaactattttatt 180

                                                                       
Query: 181 gtgattgtgttggctctcggggttgcatgtctcacgaggccgatagctattactgctgct 240
            ||||  ||||||||||||| ||||||||| | || |||||||| ||||||  |||| ||
Sbjct: 181 ttgataatgttggctctcggagttgcatgtattacaaggccgatggctattgttgctact 240

                                                 
Query: 241 gctttgacagctcttagcattgcgtttcttaatgatag 278
           |||||||||||| | |||||||| ||||||||||||||
Sbjct: 241 gctttgacagctttaagcattgcttttcttaatgatag 278


>29973.m000398 hypothetical protein
          Length = 1131

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 85/104 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggattggggaactgtgacggctgaagatctaatgggtgctttaagggaagtagattgg 60
           |||||||||||||  || || || |||||||| |||| |||  | ||||| |||||||||
Sbjct: 1   atggattggggaaacgtaacagcagaagatctgatggatgcacttagggaggtagattgg 60

                                                       
Query: 61  tctactccacctcgccctctccatgaattcttctctagattcac 104
           ||  ||||||| || ||||||  ||||||||| || ||||||||
Sbjct: 61  tcatctccaccacgtcctctctctgaattcttttccagattcac 104