Jatropha Genome Database
- JcCA0046101.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0046101.30 + phase: 0 /partial
(657 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27810.m000650 DNA-directed RNA polymerase I largest subunit, put... 615 e-175
>27810.m000650 DNA-directed RNA polymerase I largest subunit,
putative
Length = 5061
Score = 615 bits (310), Expect = e-175
Identities = 569/650 (87%), Gaps = 4/650 (0%)
Strand = Plus / Plus
Query: 1 ggtgcaactgagtctattgactcaataactttcagtttcttaactgatgaagaggttcga 60
|||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct: 28 ggtgcaactgagtccattgactcgatatctttcagtttcttaactgacgaagaggttcga 87
Query: 61 aaacatagttttgtgaagattacagaccctagattgcttgatcttgtggataggcctgtg 120
|| ||||||||||| ||||| ||| |||| |||||||||||||||||||| ||||||||
Sbjct: 88 aagcatagttttgtaaagataacaaaccccagattgcttgatcttgtggagaggcctgtt 147
Query: 121 cttggtggactatatgatccagcactggggccactaagtgaagggacaatttgcaagact 180
| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 148 cctggtggactatatgatccagcactagggccattaagtgagaggacaatttgcaagaca 207
Query: 181 tgtggccaacgattaaccaattgccctggtcattgcggccatatagatcttgtttctcca 240
||||||||||| | |||||||||||| || ||||| |||||||| || || |||||||||
Sbjct: 208 tgtggccaacgctcaaccaattgccccggccattgtggccatattgacctcgtttctcca 267
Query: 241 gtttacaatcccctgctcttcaattttcttcacaaacttctgcaaaggacctgtttttat 300
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct: 268 gtttacaatcccctgctcttcaattttcttcataaacttctgcagaggacatgtttcctt 327
Query: 301 tgcttccattttagaattcataggggccaggttgataaatgcgttaaacaactggaactc 360
||||| ||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct: 328 tgctttcattttagaatgcagaggggccaggttgagaaatgtattaaacaactggaactc 387
Query: 361 atagtaaaaggtgatattgttggggctaaaagattagattcagtcttaccaagtgagaca 420
|| |||||||||||||||||||||||||| |||||||| || |||| ||||||||| |
Sbjct: 388 attgtaaaaggtgatattgttggggctaagagattagaatcggtctcaccaagtgaagct 447
Query: 421 ttatatccagaggagagtgatggtagccatgaatcttgttctacggttcattcaggagca 480
|| ||||||||||| |||||| ||||||||||||||| |||| | || |||||||
Sbjct: 448 ttgtatccagaggaaagtgatttgagccatgaatcttgtcctacaatacactcaggagtc 507
Query: 481 caatgtcacaatggtgagcatatgaagc-agaaggagtggacatcacttcagttcagtga 539
|||||| || |||||||||||| | || | ||||| |||||||| |||||||| | |||
Sbjct: 508 caatgtaacgatggtgagcatacaaggcaacaagga-tggacatctcttcagtttactga 566
Query: 540 agcaacatctgttttaaatacttttctgatgccaaaatttaagaagtgtaagaattgtg- 598
||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 567 agcaatgtctgttttaaataattttctgaagccaaaatttaagaagtgtaagaactgtga 626
Query: 599 gggcagtaaatccaaacattaccaaacctatgtttgggtggttttacacg 648
| ||||| |||||||||||||| ||||||| ||||| |||||| |||||
Sbjct: 627 gagcagt-aatccaaacattactaaacctacttttggatggtttcacacg 675