Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0046021.20 + phase: 0 
         (768 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002076 conserved hypothetical protein                          498   e-140

>29647.m002076 conserved hypothetical protein
          Length = 882

 Score =  498 bits (251), Expect = e-140
 Identities = 422/479 (88%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggtgtttatgctgatgatgatcaagtgaaaaatgttctaggtgagaaatatggaaaacta 345
           |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||
Sbjct: 400 ggtgtttatgctgatgatgatcaagtgaaaaaggttttgggtgagaaatatggaaaaata 459

                                                                       
Query: 346 tccatttctgaactcaaggagaacaaggaattcaaagaggatctcatggaattagatatt 405
           || ||||| ||||||||| | ||||| |  |||||||| |||  |||||||   ||||||
Sbjct: 460 tcaatttccgaactcaagcaaaacaaagggttcaaagatgattacatggaaggtgatatt 519

                                                                       
Query: 406 ttcataactgttagactccaaatagtctatagtagactaagcattcgctctgtacgaagt 465
           | || |||||||||||||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 520 tgcacaactgttagactccaaatagtctacagtaagcttagcattcgctcagtacgaagt 579

                                                                       
Query: 466 gcttttgaagaatccgttggaagcagactgcaaaagttcggggggccagataacaaggaa 525
           |||||||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 580 gcttttgaagaatctgtaggaagcagactgcaaaagtttgggggtccagataataaggaa 639

                                                                       
Query: 526 ctgcttcagaggttcacttctcagtttaaggatgaatataaaataccacgaggctctgtg 585
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 640 ttgcttcagaggttcacttctcagtttaaggatgaatataaaataccacgaggttctgtg 699

                                                                       
Query: 586 attgagctgtctagggaaaaaggccatgtgcttcgaacaaccattgatgggaaggaggca 645
           || ||||| || || || ||||||||||||||||||||||| ||||| ||||||||||  
Sbjct: 700 atagagctctcaagagacaaaggccatgtgcttcgaacaacaattgacgggaaggaggtg 759

                                                                       
Query: 646 ggaagcgtacagagtaaagtcctttgtcgatcaattttagatctatatattggtgaggac 705
           |||||| | || || ||| |||| |||||||||||||||||| |||||||||||||||| 
Sbjct: 760 ggaagcatccaaagcaaactcctatgtcgatcaattttagatttatatattggtgaggat 819

                                                                      
Query: 706 ccatttgatagacaggccaaggaaaatattgaaagcaaattggcatctctccttcaaaa 764
           |||||||||||||| ||||| ||| | || || ||||||||||  |||||| |||||||
Sbjct: 820 ccatttgatagacaagccaaagaagacatcgagagcaaattggtgtctctcattcaaaa 878



 Score = 67.9 bits (34), Expect = 8e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  atggtttcactgcgcttcccattcttgttttctcagcc 38
          ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1  atggtttcactgcgctttccattcttgttttctcagcc 38