Jatropha Genome Database
- JcCA0045971.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0045971.20 - phase: 0
(1935 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30204.m001799 pentatricopeptide repeat-containing protein, putative 478 e-134
29482.m000172 pentatricopeptide repeat-containing protein, putative 54 3e-06
>30204.m001799 pentatricopeptide repeat-containing protein, putative
Length = 825
Score = 478 bits (241), Expect = e-134
Identities = 642/775 (82%), Gaps = 3/775 (0%)
Strand = Plus / Plus
Query: 355 gaacccaatagattcactttcccttctgttttaaaagcatgtgctaaaatgggaaggatt 414
||||| |||||||| ||||||||||||||||||||||| |||||||||| | ||| |
Sbjct: 22 gaacctaatagatttactttcccttctgttttaaaagcttgtgctaaaacagcaagactg 81
Query: 415 caagaaggaaaagagattcatgggtttgttgttaaattaggattggataatgatgaattt 474
|||||||| ||| || ||||||| | |||| |||||||| |||||||||||||||| |||
Sbjct: 82 caagaagggaaacaggttcatggatatgttattaaattacgattggataatgatgagttt 141
Query: 475 gttgctagcaatcttgttagaatgtacgccatgtgtggagttatggaggatgcttattta 534
|||||||| |||||||| |||||||| | ||||||||| || |||||||||||| | |
Sbjct: 142 gttgctagtaatcttgtcagaatgtatgtcatgtgtggtgtcatggaggatgctcgtgtt 201
Query: 535 ttgttcagtaattatgtttctcattttgataataattccactaaattagtgagaaataag 594
|||| || || |||||| | | | ||||| | | | ||||| | ||| ||||
Sbjct: 202 ctgtttaggaagcatgtttttgaatatgatatttgt---agtaaatcaacgagtgataaa 258
Query: 595 agaatgcaagagggtgttgttgtcttatggaatgtgatgatcgatggatttgtaaggctt 654
|| | | ||||||| |||| || || |||||||| ||||| ||||| | ||| || |||
Sbjct: 259 aggaagagagagggtattgtagttttgtggaatgttatgattgatgggtatgttagactt 318
Query: 655 ggcgacattggagcttccaggaagttgttcaataaaatgcctcaaagaagtgttgtgtca 714
|| ||| ||| || ||| ||| | ||||| |||| |||||| | |||| ||||||||
Sbjct: 319 ggtgaccttgcagtttcaagggatttgtttgataatatgccttacagaaccgttgtgtcg 378
Query: 715 tggaatgtaatgatttcggggtatgcacaaaatgggttttttaaggaggcaatggatgtc 774
|||||||| ||||| || ||||||||||||||||||| ||||||||| ||||| || |
Sbjct: 379 tggaatgtgatgatatcagggtatgcacaaaatgggtattttaaggaagcaatagagttg 438
Query: 775 tttcatgatatgcaaatgggagatgtgtccccaaattatatcactttggttagtgttctt 834
||||||||||||||||||| ||| |||| ||||||||| | ||||||||||||||||||
Sbjct: 439 tttcatgatatgcaaatggatgatatgtctccaaattatgtgactttggttagtgttctt 498
Query: 835 cctgctatttcgcgcttgggtgcactagaattaggtaaatgggtgcatttgtatgcagag 894
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 499 cctgcaatttcgcgattgggtgcacttgaattaggtaaatgggtgcatttgtatgcagag 558
Query: 895 aagaatgaaattgagattgatgatgtgcttggttctgctgtaattgatatgtatgcaaag 954
|||||| | |||||| | |||||||||||||||| || | |||||||||||| ||||
Sbjct: 559 aagaataatattgaggtcaatgatgtgcttggttccgcattgattgatatgtattcaaaa 618
Query: 955 tgtgggagcgttgagaaggcaattcaagtatttgaaaagatagaaaataaaaagaatgct 1014
||||| ||| |||||||||||| ||| || ||||| | ||| | ||||||| ||||| |
Sbjct: 619 tgtggaagcattgagaaggcaactcaggtctttgagagcatacataataaaatgaatgtt 678
Query: 1015 attacttggagtgctataattggtgggcttgccatgcacggtcgagcaaatgatgctctt 1074
||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct: 679 gttacttggagtgctataatcggtgggctagctatgcacggtcgagcaaaggatgctctt 738
Query: 1075 gattattacagaaagatgcaacaagcaggtgtaactcctactgatgttgtgtata 1129
||||| || || | ||||||| |||| ||||| ||||| | ||||||||||||||
Sbjct: 739 gattactataggaggatgcaagaagctggtgtcactcccagtgatgttgtgtata 793
>29482.m000172 pentatricopeptide repeat-containing protein, putative
Length = 1728
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 929 ctgctgtaattgatatgtatgcaaagtgtgg 959
||||| |||||||||||||||||||||||||
Sbjct: 1373 ctgctttaattgatatgtatgcaaagtgtgg 1403