Jatropha Genome Database

JcCA0045831.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045831.40 - phase: 0 
         (279 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014102 transcription regulator, putative                       309   5e-84
29736.m002007 transcription regulator, putative                        76   1e-13
29822.m003497 transcription regulator, putative                        62   2e-09

>30147.m014102 transcription regulator, putative
          Length = 276

 Score =  309 bits (156), Expect = 5e-84
 Identities = 248/278 (89%), Gaps = 3/278 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctagccgaagatcaagatcaagaacatcatcaggaagttcaagaattacagatgat 60
           ||||||||| |||||||  |||||||| ||||   ||||||||| ||||| || ||||||
Sbjct: 1   atgtctagcagaagatcccgatcaagaccatc---aggaagttcgagaatcactgatgat 57

                                                                       
Query: 61  cagattcttgatcttgttactaagttgcaacagcttcttcctgagattggcaataggcgt 120
           ||||| |||||||||||| | ||||| ||||||||||||||||||||| | |||||||||
Sbjct: 58  cagatccttgatcttgtttccaagttacaacagcttcttcctgagattcgtaataggcgt 117

                                                                       
Query: 121 tctgacaaggtttcagcagccaaggtgttgcaggagacatgcaactacatcagaaacttg 180
           ||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 118 tctgacaaggtttcagctgcgaaggtgttgcaggagacttgcaactatatcagaagcttg 177

                                                                       
Query: 181 cacagagaagtcgatgatcttagtgagaggctatctgagttattggcaactactgacact 240
           ||||||||||| ||||||||||| ||| |||| || ||| ||||||||||||||||||||
Sbjct: 178 cacagagaagttgatgatcttagcgagcggctctcagagctattggcaactactgacact 237

                                                 
Query: 241 gctcaagctgccataattaggaatttactaatgcaata 278
           || |||||||| ||||||||||||||||| ||||||||
Sbjct: 238 gcccaagctgctataattaggaatttacttatgcaata 275


>29736.m002007 transcription regulator, putative
          Length = 282

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 70  gatcttgttactaagttgcaacagcttcttcctgagattggcaataggcgttctgacaag 129
           ||||||||| | ||||||||||| ||| ||||||||||| | |||||||| || ||||||
Sbjct: 67  gatcttgtttccaagttgcaacaacttattcctgagattcggaataggcgctccgacaag 126

                                                                       
Query: 130 gtttcagcagccaaggtgttgcaggagacatgcaactacatcagaaacttgcacagagaa 189
           || || ||| | |||||| | || || || |||||||| || | || ||| || ||||||
Sbjct: 127 gtgtctgcatcaaaggtgcttcaagaaacttgcaactatataaaaagcttacatagagaa 186

                         
Query: 190 gtcgatgatcttag 203
           || |||||||||||
Sbjct: 187 gtggatgatcttag 200


>29822.m003497 transcription regulator, putative
          Length = 273

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 91  cagcttcttcctgagattggcaataggcgttctgacaaggtttcagcagccaaggtgttg 150
           |||||||||||||||||| || | |||||| | || ||||| |||||  | |||||  | 
Sbjct: 82  cagcttcttcctgagattcgccaaaggcgtcccgataaggtatcagcttctaaggtccta 141

                                              
Query: 151 caggagacatgcaactacatcagaaacttgcacag 185
           || ||||| |||||||||||||| |||||||||||
Sbjct: 142 caagagacctgcaactacatcaggaacttgcacag 176