Jatropha Genome Database

JcCA0045831.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045831.10 - phase: 0 
         (162 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014100 Vacuolar protein sorting, putative                      168   6e-42
29736.m002018 Vacuolar protein sorting, putative                       50   4e-06

>30147.m014100 Vacuolar protein sorting, putative
          Length = 576

 Score =  168 bits (85), Expect = 6e-42
 Identities = 121/133 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtgttggtgttagctctaggggatttacacataccccatagagcacctgatctgcct 60
           |||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||| |||
Sbjct: 1   atggtgttagtgttagctctcggggatttacacattccccatagagcatctgatctacct 60

                                                                       
Query: 61  gccaagttcaagtcaatgctcgttcctggcaagatccagcacatcatttgcacaggcaat 120
           || ||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct: 61  gcaaagtttaagtcaatgcttgttcctggcaagatccaacatatcatttgcactggcaat 120

                        
Query: 121 ctttgtatcaaag 133
           |||| ||||||||
Sbjct: 121 ctttctatcaaag 133


>29736.m002018 Vacuolar protein sorting, putative
          Length = 567

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 50  ctgatctgcctgccaagttcaagtcaatgctcgttcctggcaagatccagcacatcattt 109
           ||||| ||||| | ||||||||||| ||||| |||||||| ||||| || || |||||||
Sbjct: 50  ctgatttgcctccaaagttcaagtccatgcttgttcctgggaagattcaacatatcattt 109

            
Query: 110 g 110
           |
Sbjct: 110 g 110