Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045131.20 + phase: 0 /partial
         (335 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003380 conserved hypothetical protein                          155   2e-37
30170.m014188 conserved hypothetical protein                           50   8e-06

>29794.m003380 conserved hypothetical protein
          Length = 642

 Score =  155 bits (78), Expect = 2e-37
 Identities = 120/134 (89%)
 Strand = Plus / Plus

                                                                       
Query: 202 actagagtgagagagaagaaagtctactccttgcctggccagaaatatgatcctcctgaa 261
           ||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| 
Sbjct: 265 actagagtgagggagaagaaagtgttctccttgcctggccagagatatgatcctcctgag 324

                                                                       
Query: 262 gagagagaaccccttaggatattttacgaatcattgtcaaaacaaataccaagtagtgag 321
           ||||| || |||||||||||||| ||||| |||||||| ||||| ||||||  |||||||
Sbjct: 325 gagagggagccccttaggatattctacgagtcattgtctaaacagataccatctagtgag 384

                         
Query: 322 atggcggaattttg 335
           ||||| ||||||||
Sbjct: 385 atggcagaattttg 398



 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 133 actgtcactaaaacagaggtaaaatcaaaaacagcatccactacatcaaagaccacaaca 192
           ||||| |||||||| ||||| |||||||||||| || ||| | |||||||||||||||||
Sbjct: 166 actgttactaaaactgaggtgaaatcaaaaacaacaaccagttcatcaaagaccacaaca 225

            
Query: 193 a 193
           |
Sbjct: 226 a 226


>30170.m014188 conserved hypothetical protein
          Length = 822

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 232 ttgcctggccagaaatatgatcctcctgaagagagagaaccccttaggatattttacgaa 291
           ||||||||||||||    || ||||||||||||||||| || |||||||| ||||| |||
Sbjct: 406 ttgcctggccagaagcgagaccctcctgaagagagagacccacttaggattttttatgaa 465

                
Query: 292 tcatt 296
            ||||
Sbjct: 466 acatt 470