Jatropha Genome Database
- JcCA0044231.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0044231.20 - phase: 0
(1323 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30146.m003515 pentatricopeptide repeat-containing protein, putative 369 e-101
30170.m014308 pentatricopeptide repeat-containing protein, putative 56 6e-07
>30146.m003515 pentatricopeptide repeat-containing protein, putative
Length = 1641
Score = 369 bits (186), Expect = e-101
Identities = 725/902 (80%), Gaps = 2/902 (0%)
Strand = Plus / Plus
Query: 10 gttggtgtctttccagaccatttaacgttcccttttcttgccaaggcgtcggcttgcctc 69
||||| |||||||| || ||||||| | || ||||||| ||||| |||||| ||||
Sbjct: 322 gttggagtctttcctgattatttaacatatccatttcttgttaaggcttcggctcgcctt 381
Query: 70 ttgaagcgagaacttggtttggccattcatggctatattacaaaagctggttatgagtcc 129
|||||||||||| | || || | ||||||| |||||| |||| ||| | ||| ||
Sbjct: 382 ttgaagcgagaattagggttttctattcatgcacatattataaaacatggctttgaatct 441
Query: 130 gataggtttgtttctaattctttgattcacatgtattcttcctttagagatattccaaat 189
|||||||| |||| ||||||||| |||| |||||| |||| ||| | |||||| | |
Sbjct: 442 gataggttcatttcgaattctttggttcatatgtatgcttcatttggcgatatttcttgt 501
Query: 190 gcacgaaaagtatttgatggaataccggtgaagaatttggtttcatggaattccatgcta 249
|||||| | || ||||||||||| || || ||||||||||| || ||||| || ||| |
Sbjct: 502 gcacgatacgtgtttgatggaatgccagttaagaatttggtctcctggaactctatggtg 561
Query: 250 gatggctatgcaaagtgtggggatataagcatggcacgccaagtgtttgatttaatgcct 309
||||| | |||||||||||| |||| ||||||| || | |||||||||||||||
Sbjct: 562 gatggttctgcaaagtgtggaaatatggttttggcacgtcagctctttgatttaatgcct 621
Query: 310 gaacaagacgtcttatcatggagttgtttgattgatgggtatgtcaggaaaggggactac 369
|| | || ||||| |||||||||| |||||||||||||||||| | || ||||| ||
Sbjct: 622 gatcgggatgtcttgtcatggagttctttgattgatgggtatgttaaaaatggggattat 681
Query: 370 gatgaagctttagctgtttttgaggaaatgcgagtttctggtcctaaaccgaatgaggtg 429
| || ||| | | |||||||| ||||||| || || |||||||| |||||||||||
Sbjct: 682 ggagatgctatggtggtttttgataaaatgcgtgtctcaggtcctaagccgaatgaggta 741
Query: 430 actatggtcagtgtattgtgtgcttgtgcacatttaggtgctcttgataaaggaagaatg 489
|| ||||| |||||||| ||||||||||| || || || || ||||||||||||||||||
Sbjct: 742 acaatggtgagtgtattatgtgcttgtgctcacttgggggcacttgataaaggaagaatg 801
Query: 490 atgcatcattatgtgattgataatgagttgccattaactctggttttacgtacctccctt 549
||||||||||||||||| |||||| |||||||||| || ||||| || | ||||| |||
Sbjct: 802 atgcatcattatgtgatcgataataagttgccattgacactggtgctatgcacctctctt 861
Query: 550 gttgacatgtatgcaaaatgcggggcaatacaggaggctttacatgtgtttcgtagcggt 609
|| ||||||||||| |||||||| || || | ||||| || |||| |||||| || |
Sbjct: 862 gtggacatgtatgccaaatgcggagctatcaacgaggcgtttgatgtatttcgtggcatt 921
Query: 610 ctcatga-agccaagtgatgttttcatttggaactctatgattggaggattcgcatgtca 668
| || | | | |||||||| | | ||||| |||||||||||||| | ||| |||
Sbjct: 922 c-cagcagaactgagtgatgtcctactatggaatgctatgattggaggacttgcaactca 980
Query: 669 tggtttggtaaaagaatctctagatttgttttcagaaatgcatatagttggcgttaagcc 728
|||||| || |||||||| || ||||||||| ||||||| || | ||||| ||||||||
Sbjct: 981 tggtttagtcaaagaatcacttgatttgtttaaagaaatgaattttgttggggttaagcc 1040
Query: 729 agatgagatcacatacttgaatttgttgagtgcttgtgctcatggtggattggtaaagga 788
||||||||||||||||||| |||||| |||||| || |||||||| || ||||||||
Sbjct: 1041 ggatgagatcacatacttgagcttgttgcatgcttgcgcgcatggtgggttagtaaagga 1100
Query: 789 agcttggtatttctttgattgtcttggtaaaaatggcatgactcccaaaagtgagcatta 848
||| ||||||||||||||||||||||| ||| |||||||||||| ||| | |||||| ||
Sbjct: 1101 agcgtggtatttctttgattgtcttggcaaacatggcatgactctcaagattgagcacta 1160
Query: 849 tgcttgtatggttgatgtcatggctcgtgccggtcaagtagcagaggcttatcaatttct 908
||||||||| || ||||| ||||||||||| |||||| ||||| |||| || || |||||
Sbjct: 1161 tgcttgtatcgtggatgttatggctcgtgctggtcaaatagcaaaggcataccagtttct 1220
Query: 909 at 910
||
Sbjct: 1221 at 1222
Score = 87.7 bits (44), Expect = 2e-16
Identities = 116/140 (82%)
Strand = Plus / Plus
Query: 1094 ccagaagcatgagagaggccatggagaggatgggggtgaaaaaatcccctggttatagtt 1153
|||||| ||||||| | ||||||||||||||||| || | |||||| |||||||||||||
Sbjct: 1223 ccagaaacatgagaaaagccatggagaggatgggtgtaagaaaatctcctggttatagtt 1282
Query: 1154 ttgtagagatgcatggagctcttcatagatttgttgcgcatgataaatcccatcctagct 1213
|||| | ||| | | | |||||| ||||| |||| ||||||||| | ||||| || |
Sbjct: 1283 ttgtggcgattaacgaaagtcttcacagattcattgcacatgataaaacacatccgagtt 1342
Query: 1214 cagagcaaatatatatgatg 1233
|||||| |||||||||||||
Sbjct: 1343 cagagctaatatatatgatg 1362
>30170.m014308 pentatricopeptide repeat-containing protein, putative
Length = 2127
Score = 56.0 bits (28), Expect = 6e-07
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 833 ccaaaagt-gagcattatgcttgtatggttgatgtc 867
|||||||| |||||||||||||||||||||||||||
Sbjct: 1645 ccaaaagtagagcattatgcttgtatggttgatgtc 1680