Jatropha Genome Database

JcCA0044231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0044231.10 + phase: 2 /partial
         (514 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30221.m002218 mads box protein, putative                              274   5e-73

>30221.m002218 mads box protein, putative
          Length = 702

 Score =  274 bits (138), Expect = 5e-73
 Identities = 416/508 (81%), Gaps = 3/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgaagcaaattatagaaagatatcagaagcttagggggaacagtattcctgagcatga 60
           |||| ||||||| |||||||| || |||||| |||  || | | | ||||| ||||||||
Sbjct: 189 gatggagcaaatcatagaaaggtaccagaagattacaggaacctgcattcccgagcatga 248

                                                                       
Query: 61  tagtttaagggaacatctatatggggagttggcaatgctaaggaaagaaacttgccgtct 120
           ||||   || ||||| ||||  || |||||||| ||||| || ||||||||| |||||||
Sbjct: 249 tagt---agagaacaactattcggtgagttggccatgctgagaaaagaaactcgccgtct 305

                                                                       
Query: 121 tcaattaaatctgcagctttacagaggtgaagacatgagttccatttcttttgaggattt 180
           |||  | ||  ||| ||  ||||  |||||||||||||| || ||| | |||||||| ||
Sbjct: 306 tcagctgaacatgcggcggtacactggtgaagacatgagctctattccatttgaggagtt 365

                                                                       
Query: 181 aggtgaactcgaacaaaaactagaatcctctgttgccaagatccgcaaccggaagaatga 240
            || ||||| |||||| |||||||   ||| || |||||| | ||  |||||||||||||
Sbjct: 366 gggggaacttgaacaagaactagagcgctccgtggccaaggttcgggaccggaagaatga 425

                                                                       
Query: 241 actcttgcaacagcaactggataatctgcggaagaaggagcgaatgttggaggaggaaaa 300
            |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 426 gctcttgcaacagcagctggataatctgcgcaggaaggagcgaatgttggaggaggaaaa 485

                                                                       
Query: 301 tggcaatatttaccgttggatccaggatcaacgtgtcgcaatggagtatcaccaggtaac 360
           ||||||||| ||||||||||| ||||| || || |  ||  ||||||| || ||||  ||
Sbjct: 486 tggcaatatgtaccgttggattcaggagcatcgcgcagcgctggagtaccagcaggcgac 545

                                                                       
Query: 361 aatagaagcaaaaccagcggagcatcaacaagttcttgaacaattcccattctgtggaga 420
           ||| |||||||| |||| ||| ||||| |||||||| || || |||||||||||||| ||
Sbjct: 546 aatggaagcaaagccagtggaacatcagcaagttctggatcagttcccattctgtgggga 605

                                                                       
Query: 421 accaagtagtctccttcagcttgcaatcattccttctcaaattcagtcgtaccatctcca 480
            || |  ||| |||||||||| |||| |||||| |||||||||||  | |||||||||||
Sbjct: 606 gcctaacagtgtccttcagctcgcaaccattccctctcaaattcatccataccatctcca 665

                                       
Query: 481 gcttgctcagcccaaccttcaaggttct 508
           ||| |||||||| || ||||||||||||
Sbjct: 666 gctcgctcagccaaatcttcaaggttct 693