Jatropha Genome Database

JcCA0043901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0043901.10 + phase: 0 /partial
         (460 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004053 r2r3-myb transcription factor, putative                 105   2e-22
30147.m013885 r2r3-myb transcription factor, putative                  54   7e-07

>30138.m004053 r2r3-myb transcription factor, putative
          Length = 870

 Score =  105 bits (53), Expect = 2e-22
 Identities = 113/133 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggaggactccatgttacaatgaagctggtctaaagaaaggtgcatggacggccgat 60
           ||||| || |||||||| | || |||||| ||  ||||||||||||||||||| || |||
Sbjct: 1   atgggaagaactccatgctgcagtgaagcaggattaaagaaaggtgcatggacagctgat 60

                                                                       
Query: 61  gaagatcataaactcatcgcttatattcaagaacacggcgaaggtggctggcgaaccttg 120
           || ||||| |||||||| ||||| |||||| ||||||||||||| || ||||| ||||||
Sbjct: 61  gaggatcagaaactcattgcttacattcaaaaacacggcgaaggagggtggcggaccttg 120

                        
Query: 121 ccgcaaaaagctg 133
           || || |||||||
Sbjct: 121 cctcagaaagctg 133


>30147.m013885 r2r3-myb transcription factor, putative
          Length = 1137

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 129 agctggtctccaaagatgtgggaagagttgcagattaagatgg 171
           ||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 129 agctggtctgcaaaggtgtggaaagagttgcagattgagatgg 171