Jatropha Genome Database

JcCA0040481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0040481.10 + phase: 0 
         (294 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001690 mads box protein, putative                              224   2e-58
30099.m001672 mads box protein, putative                               60   8e-09

>29838.m001690 mads box protein, putative
          Length = 186

 Score =  224 bits (113), Expect = 2e-58
 Identities = 158/173 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacaaggcagaaaatccagataaaaaagattgacaacaatacagcaagacaagtgact 60
           ||||||||||| ||||||||||| || |||||||| ||||  ||||||||||||||||||
Sbjct: 1   atgacaaggcaaaaaatccagatcaagaagattgataacataacagcaagacaagtgact 60

                                                                       
Query: 61  ttttctaagagaagaagagggcttttcaagaaagcatatgagctctccactctttgtgat 120
           ||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct: 61  ttttcaaagagaagaagagggcttttcaagaaagcttatgaactatcaactctttgtgat 120

                                                                
Query: 121 gctgagattgctcttatagtcttttctggaactggaaagctttttgagtatgc 173
           |||||||| |||||| ||||||||||||  |||||||||||||||||||||||
Sbjct: 121 gctgagatagctcttttagtcttttctgctactggaaagctttttgagtatgc 173


>30099.m001672 mads box protein, putative
          Length = 654

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 79  gggcttttcaagaaagcatatgagctctccactctttgtgatgctgagattgct 132
           |||||||||||||| ||   |||||| ||||||||||||| |||||||||||||
Sbjct: 94  gggcttttcaagaaggctagtgagctttccactctttgtggtgctgagattgct 147