Jatropha Genome Database

JcCA0038081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0038081.10 - phase: 1 /pseudo/partial
         (596 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004627 conserved hypothetical protein                          369   e-101

>29929.m004627 conserved hypothetical protein
          Length = 1215

 Score =  369 bits (186), Expect = e-101
 Identities = 417/492 (84%), Gaps = 4/492 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gagctctgcatggactggagctgtcaaacctgagaatgatccgatgctttacactagtca 104
            ||||||||  ||| |||| ||||| ||||||||||||||||| |||||||| |||| |||
Sbjct: 663  gagctctggttgggctggggctgtgaaacctgagaatgatcccatgctttatactaatca 722

                                                                        
Query: 105  atcctcgctaaacttcaacagcggaaaaa-cctttttcctggatccttatctcagggcta 163
            |||||| || ||||||| ||| ||||||| |||||||||||||||  | |||||  ||||
Sbjct: 723  atcctctcttaacttcagcagtggaaaaaacctttttcctggatcgatgtctcatagcta 782

                                                                        
Query: 164  tagaagtggaaagcagttcccattcttacaatgtactagctcttctgcagttcctcgaga 223
            |||| ||||||||||||||||||||| ||| ||||||||   |||| |  ||||| ||||
Sbjct: 783  tagaggtggaaagcagttcccattctcacattgtactag---ttctacccttcctggaga 839

                                                                        
Query: 224  atctgtttgtcaaactattcttgattctgattcgacattaggtagtagctgcagcagcca 283
            |||||||||||||||||||||||||  |  ||| |||||||| |||||| |  |||  ||
Sbjct: 840  atctgtttgtcaaactattcttgatgttcgttccacattaggcagtagcagtggcaatca 899

                                                                        
Query: 284  gaaaatgttctctgatggtgcaaaccgagttattgactcgaaccgtgctctctctcttct 343
            |||||||||||||||||||| ||||| ||| |||||||| ||  ||||||||||||||||
Sbjct: 900  gaaaatgttctctgatggtgtaaaccaagtcattgactcaaatggtgctctctctcttct 959

                                                                        
Query: 344  gtcatctccatcagcccagactcgagagattggcttgagccacatggtgcagcctgacct 403
            |||||| |||  |||  ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 960  gtcatcgccacaagctgagactcgggagattggcttgagccacatggtgcagcctgacct 1019

                                                                        
Query: 404  gaacccccctgctcggtccttgaacccaagcctgaactttaatgctcttggaatgggaag 463
             |||||||| ||||  |||||||  |||||| | |||||||    ||||||||||| | |
Sbjct: 1020 aaaccccccagctcaatccttgattccaagcttaaactttagcaatcttggaatggaagg 1079

                                                                        
Query: 464  tgggccagttgaatctgttttagtctctgatggcagtagcaatgccaatcttcatggcca 523
            ||| ||||| ||||||||||| ||||||||||| |||  ||| | |||||| ||| ||||
Sbjct: 1080 tggaccagtagaatctgttttggtctctgatggaagtcacaacggcaatctccatagcca 1139

                        
Query: 524  ggatatgtttca 535
            ||||||||||||
Sbjct: 1140 ggatatgtttca 1151