Jatropha Genome Database

JcCA0036251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0036251.10 + phase: 1 /pseudo/partial
         (506 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014111 Protein HVA22, putative                                 280   8e-75
29813.m001456 Protein HVA22, putative                                  94   1e-18

>30147.m014111 Protein HVA22, putative
          Length = 516

 Score =  280 bits (141), Expect = 8e-75
 Identities = 222/249 (89%)
 Strand = Plus / Plus

                                                                       
Query: 184 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 243
           ||||||||||||||||||| |||||||| ||  |||| |||||||| || ||||||||||
Sbjct: 212 ggataccaatctggtcatacgcaaagctcattgtgacctgctggttggtcatcccatact 271

                                                                       
Query: 244 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 303
           ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 272 tcagtggtgctgcatatgtttatgagcactttgtgaggcctctctttgttaacccacagc 331

                                                                       
Query: 304 aaaccgttaatatctggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgaca 363
           ||||| ||||  |||||||||||||||||||||||||| ||||||| ||   ||||||||
Sbjct: 332 aaaccattaacgtctggtacgtcccaaggaagaaggatatcttcagtaagaaagatgaca 391

                                                                       
Query: 364 ttctgactgctgcagagagatacattgaagagaatggaactgaagcgttcgagaagctca 423
           |||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 392 ttctaactgctgcagaaagatacattgaggagaatgggactgaagcatttgagaagctca 451

                    
Query: 424 ttcacaggg 432
           |||| ||||
Sbjct: 452 ttcataggg 460



 Score =  188 bits (95), Expect = 2e-47
 Identities = 137/151 (90%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcaattgaaaccaagt 70
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 62  ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcgattgagaccaagt 121

                                                                       
Query: 71  ctcccattgatgatcagcaatggcttacttactgggtcctctattcaatgattacgctct 130
           ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||  | |
Sbjct: 122 ctcccattgatgaccagcaatggcttacttattgggtcctttattctatgattacattat 181

                                          
Query: 131 ttgagctcacttttgctaaagttattgaatg 161
           | |||||||| ||||| ||||| || |||||
Sbjct: 182 tcgagctcacctttgccaaagtcatagaatg 212


>29813.m001456 Protein HVA22, putative
          Length = 528

 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 318 tggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgacattctgactgctgca 377
           |||||||||||||| ||||||||||| || | ||||| |||||||||||| || ||||| 
Sbjct: 346 tggtacgtcccaagaaagaaggatgtgtttaccaaacaagatgacattctaacagctgct 405

                                                          
Query: 378 gagagatacattgaagagaatggaactgaagcgttcgagaagctcat 424
           |||| ||| || |||||| ||||||||||||| || |||| ||||||
Sbjct: 406 gagaaatatatggaagagcatggaactgaagcttttgagaggctcat 452