Jatropha Genome Database

JcCA0030161.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0030161.10 + phase: 0 /partial
         (501 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007117 farnesyl-diphosphate farnesyltransferase, putative      523   e-148

>30131.m007117 farnesyl-diphosphate farnesyltransferase, putative
          Length = 1239

 Score =  523 bits (264), Expect = e-148
 Identities = 432/488 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    ttccatgcctctgaattggaagatttggcaccagatgtcctttccaactcaatgggttta 60
            ||||||||||||| |  |||||||||||||||||||  ||| ||||||||||||||||||
Sbjct: 550  ttccatgcctctggaacggaagatttggcaccagataccctctccaactcaatgggttta 609

                                                                        
Query: 61   tttcttcagaaaacaaacattattcgagattatctggaggacataaatgagatacccaag 120
            |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 610  tttcttcagaaaactaacattattcgagattatctggaggatataaatgagatacctaag 669

                                                                        
Query: 121  tcacgcatgttttggcctcgccagatctggagtaaatatgttgacaaacttgaggacttg 180
            |||||||||||||||||||  || |||||||| |||||||||   ||||| ||||| |||
Sbjct: 670  tcacgcatgttttggcctcatcaaatctggagcaaatatgttactaaactcgaggatttg 729

                                                                        
Query: 181  aaatatgaagagaactcgctcaaggcagtgcgatgcttgaatgatatggtgacaaatgct 240
            |||||||||||||||||| |||||||||||| ||||||||| |||||||| || ||||||
Sbjct: 730  aaatatgaagagaactcggtcaaggcagtgcaatgcttgaacgatatggttactaatgct 789

                                                                        
Query: 241  ctgatgcatgtggatgactgcttgaagtacatgtctgcattgcgtgatcctgctatattt 300
             |||| ||| ||||||| ||||| || |||||||||||| |||| |||||| ||||||||
Sbjct: 790  ttgatccatatggatgattgcttaaaatacatgtctgcactgcgcgatccttctatattt 849

                                                                        
Query: 301  cgattttgtgtcatcccgcagatcatggcaattggaacactagcattgtgctacaacaac 360
            || ||||| |  ||||| ||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 850  cgtttttgcgcaatccctcagatcatggcaattggaaccttagcattgtgctacaacaac 909

                                                                        
Query: 361  atcgaagtattcagaggtgttgtcaagatgaggcgtggtctaactgctaaggtcatttat 420
             | ||||||||||||||||| || || |||||||||||||| ||||| ||||||||| | 
Sbjct: 910  gttgaagtattcagaggtgtagtgaaaatgaggcgtggtcttactgcgaaggtcattgac 969

                                                                        
Query: 421  caaacaaaaagtatggccgatgtatatggtgctttctttgatttctcctgtatgctcaag 480
            | |||||| | |||||| ||||||||||||||||| | ||| |||||||||||||| |||
Sbjct: 970  cgaacaaagactatggctgatgtatatggtgctttttatgacttctcctgtatgcttaag 1029

                    
Query: 481  tccaaggt 488
            ||||||||
Sbjct: 1030 tccaaggt 1037