Jatropha Genome Database

JcCA0029821.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029821.20 + phase: 0 /partial
         (349 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29915.m000489 Thioredoxin H-type, putative                            349   7e-96

>29915.m000489 Thioredoxin H-type, putative
          Length = 399

 Score =  349 bits (176), Expect = 7e-96
 Identities = 295/332 (88%), Gaps = 2/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ctgatgagcatgttgaatttgttggtagtaatgtgcacctcgttactaccaatgagacct 79
           ||||| |||| |||||||||| ||||| |||||||  |||| |||||||||| ||||  |
Sbjct: 23  ctgatcagcacgttgaatttgctggtaataatgtgagcctcattactaccaaagagagtt 82

                                                                       
Query: 80  gggaacagaagctgtcagaagcaagtagagatggcaaaactgttttggcaaatttcagtg 139
           |||| ||||||||||| ||||| ||||  ||||| |||| ||| ||||| ||||||||||
Sbjct: 83  gggaccagaagctgtcggaagctagtaaggatggaaaaattgtcttggcgaatttcagtg 142

                                                                       
Query: 140 caacatggtgtggcccttgtagaatgattgcgcccttctaccgtgagctatctgagaaat 199
           ||||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct: 143 caacatggtgtggtccttgtagaatgattgcaccattctaccgtgaactgtctgagaaat 202

                                                                       
Query: 200 acccgtctctaatgttcctgttggttgatgttgatgaattacctgacttcagcacctcgt 259
           |||| ||  | |||||| ||||| ||||||||||||||||| |||||||||||| ||| |
Sbjct: 203 acccttcgattatgttcttgttgattgatgttgatgaattagctgacttcagcagctctt 262

                                                                       
Query: 260 gggatatcaaagcaactcctacttttttc-ttcttagagatgggcagcaacttgacaagc 318
           ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 263 gggatatcaaagctactcctacatttttctttcttagagatgggcagcaacttgacaagc 322

                                           
Query: 319 ttgtggg-gccaacaagccggagctacagaag 349
           ||||||| ||||||||||||||||||||||||
Sbjct: 323 ttgtgggagccaacaagccggagctacagaag 354