Jatropha Genome Database
- JcCA0029721.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0029721.10 - phase: 0 /pseudo/partial
(1364 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30055.m001550 DNA binding protein, putative 894 0.0
30131.m007163 Transcription factor HBP-1b(c1), putative 64 2e-09
28883.m000741 Transcription factor HBP-1b(c1), putative 54 2e-06
>30055.m001550 DNA binding protein, putative
Length = 1332
Score = 894 bits (451), Expect = 0.0
Identities = 783/891 (87%), Gaps = 27/891 (3%)
Strand = Plus / Plus
Query: 1 atggcgagccacggtattggagggactggtttatcagactctggtccttcaaatcaccat 60
||||| |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 1 atggctagccacggaattggagggacgggtttatcagactcaggtccttctaatcaccat 60
Query: 61 catcatctttcatatgcaact---cttcatggaatcaacactccatctaccagtttcatt 117
| | || |||||| || |||||||||||||||||| ||||| | |||||
Sbjct: 61 c------tctcttatgcagctgctcttcatggaatcaacact---tctacaaacttcatg 111
Query: 118 aatcaagagggatctgctttcgatttcggagagctggaagaagcaattgttctgcaagga 177
|||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 112 aatcaagaaggatctgcttttgattttggagagctagaagaagctattgttctgcaagga 171
Query: 178 gttaagttaagaaatgatgaagctaaagcaccttttttcacagtaacaggcagacctgct 237
|||||| | || ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 172 gttaagattaggaatgatgaagctaaagcacctttatttacggtaacaggcagacctgct 231
Query: 238 gctactctggaaatgttcccatcatggccaatgagattccaacaaacaactccaagagta 297
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 232 gctactctggaaatgttcccttcatggccaatgagattccaacacaca---ccaagag-- 286
Query: 298 ggaagttcaaaatcaggaggagagagtactgattcaggatcagcagtaaatactctttca 357
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 287 -gaagttcaaagtcaggaggggagagtactgattcaggatcagcagtaaacactctttca 345
Query: 358 agcaaagctgaagcacagctggacccagaatctcctgtaagtaaaaaagcatcctcttca 417
||||||||||| || ||||| || |||||||||||| | |||||||| ||||| ||||
Sbjct: 346 agcaaagctgatgcccagctagagccagaatctcctattagtaaaaaggcatc---ttca 402
Query: 418 gaccatcaggcttttgatcagaagcatctacagtttcaacagcaaca------aatagag 471
|| ||||| | |||||||||||||||||| ||| ||||||||||||| | |||||
Sbjct: 403 gatcatcaaggttttgatcagaagcatctgcagcttcaacagcaacagcaacaactagag 462
Query: 472 atggcaagtgatacctcaaggaccggaggagggcccccatcagaactaaacccatcatct 531
|||||||||||||||||||| || ||||| || || |||||||| || |||||| ||
Sbjct: 463 atggcaagtgatacctcaagaacaggaggcggaggaccctcagaactgaatccatcacct 522
Query: 532 gcaaaaccacctcaagaaaagaggaagggttccacatcagagaaacatcttgatgctaag 591
|| ||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 523 gccaaaacaccacaagaaaagaggaaaggttcgacatcagagaaacagcttgatgctaag 582
Query: 592 acattgaggcgtttagcacaaaacagagaagctgcaaggaagagccgccttaggaagaag 651
||| | || |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 acactcagacgtttagctcaaaacagagaagctgcaaggaagagccgccttagaaagaag 642
Query: 652 gcctatgtgcagcagctagaatccagtagaataaagcttacccagttagagcaagacctc 711
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct: 643 gcctatgtgcagcagctagaaagcagtagaatcaagcttacccagttagagcaagatctc 702
Query: 712 cagagagcccgccagcaggggttgttcttaggtggctgtggtggtgccgttggcaatata 771
|| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 703 caaagagcccgccagcagggactgttcttaggtggctgtggtggtgccggtggcaattta 762
Query: 772 agctctggagctgcaatatttgatatggagtatgcaagatggctagaggatgatcagagg 831
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct: 763 agctctggagctgcaatatttgatatggagtatgcaagatggttagaggaagatcatagg 822
Query: 832 catatgtcagagctcagaacaggattgcaagcacatttaacagatgttgac 882
|| |||||||| ||| | ||||||||||||||||||||| |||||| ||||
Sbjct: 823 cacatgtcagacctccggacaggattgcaagcacatttatcagatggtgac 873
Score = 224 bits (113), Expect = 1e-57
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 1069 gacccattaacagaacagcaaattatgggaatttacagcctccaacaatcctcacagcaa 1128
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct: 898 gacccattaacagaacagcaatttatggggatttacagcctccaacaatcctcacaacag 957
Query: 1129 gcagaagaggcccttttccaaggcctagagcagcttcaacagtctttagttgacaccatt 1188
||||||||||| || | |||||||||||||||||| || |||||| ||||||||||||||
Sbjct: 958 gcagaagaggctctctcccaaggcctagagcagctccagcagtctctagttgacaccatt 1017
Query: 1189 gccagtggtccggtcattgacggaatgcagcagatggcggtggccttaggcaagcttgcc 1248
|||||||| || ||| |||| || |||||||| ||||| ||||| | ||||||||||||
Sbjct: 1018 gccagtgggccagtcgttgatggcatgcagcaaatggcagtggcacttggcaagcttgcc 1077
Query: 1249 aatcttgaaggattcgt 1265
||||||||||| |||||
Sbjct: 1078 aatcttgaaggtttcgt 1094
>30131.m007163 Transcription factor HBP-1b(c1), putative
Length = 1392
Score = 63.9 bits (32), Expect = 2e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 610 caaaacagagaagctgcaaggaagagccgccttaggaagaaggcctatgtgcagca 665
||||| ||||||||||||||||| ||||| | |||||||| ||||||||||||||
Sbjct: 553 caaaatagagaagctgcaaggaaaagccgtttgaggaagaaagcctatgtgcagca 608
>28883.m000741 Transcription factor HBP-1b(c1), putative
Length = 1431
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 622 gctgcaaggaagagccgccttaggaagaaggcctatgtgcagcagct 668
|||||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 610 gctgcaaggaagagtcgacttaggaagaaagcttatgtccagcagct 656