Jatropha Genome Database

JcCA0029581.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029581.30 - phase: 2 /partial
         (181 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001550 DNA binding protein, putative                           159   7e-39

>30055.m001550 DNA binding protein, putative
          Length = 1332

 Score =  159 bits (80), Expect = 7e-39
 Identities = 155/180 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    acagtgagacaggcagctcggtgctttctggtgatcggagaatattatggccgattacga 61
            ||||| |||||||  |||||||| ||||||||||||||||| || ||||| ||  |||||
Sbjct: 1150 acagtaagacagggggctcggtgttttctggtgatcggagagtactatgggcggctacga 1209

                                                                        
Query: 62   gcacttagttccctttgggcatctcgtcctcgagagagcatgatgggagatgaaaattca 121
            |||||||| ||||| ||||||||||||||| |||||   |||||||| ||||| ||||||
Sbjct: 1210 gcacttagctccctctgggcatctcgtcctagagagtcgatgatgggggatgataattca 1269

                                                                        
Query: 122  tgtcaaacgacaagtgatctacaaatggttcaaccaccacaaaatcatttcacaaacttt 181
            || ||||  |||| ||||||||||||||||||||   | |||||||||||||||||||||
Sbjct: 1270 tgccaaatcacaactgatctacaaatggttcaacagtctcaaaatcatttcacaaacttt 1329