Jatropha Genome Database

JcCA0029471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029471.10 + phase: 1 /partial
         (332 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001400 conserved hypothetical protein                          309   6e-84

>29933.m001400 conserved hypothetical protein
          Length = 741

 Score =  309 bits (156), Expect = 6e-84
 Identities = 246/276 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  gaaggccttgaaggagaaattacacgaaggtcattgacacatagttcatgggatctttca 98
           |||||||||||| ||||||| |||||||||||  |||||||||||||||||||||| |||
Sbjct: 424 gaaggccttgaacgagaaatcacacgaaggtcgctgacacatagttcatgggatctgtca 483

                                                                       
Query: 99  tcctctaaagaccctgaacgccgtggatggcatcctgttacctataaattctctgatgct 158
           ||||| || || ||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct: 484 tcctcaaaggatcctgaacgccgcggatggcatcctcttacctataaattctctgacgct 543

                                                                       
Query: 159 actcccacactcatcaaaaacataaaggacattgacaatatttattatgagactgaatat 218
           |||||||  || || |||   || ||||| ||||||||||||||||||||||||||||||
Sbjct: 544 actcccatgcttataaaatctattaaggatattgacaatatttattatgagactgaatat 603

                                                                       
Query: 219 cgaaaagagtggtgcagcagcaaaggaaaaccatccacttgcttccttttcgcaagaaaa 278
           || | ||||||||||||||||||||| ||||||||||  ||||||||||| |||||||||
Sbjct: 604 cgtagagagtggtgcagcagcaaagggaaaccatccaaatgcttcctttttgcaagaaaa 663

                                               
Query: 279 ttcactcgccccgctgctcttcgccttcttaatatg 314
           ||||| || || ||||||||||| ||||||||||||
Sbjct: 664 ttcacccgtcctgctgctcttcgtcttcttaatatg 699