Jatropha Genome Database
- JcCA0029371.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0029371.20 + phase: 0 /TE
(1272 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29709.m001222 retinoblastoma-binding protein, putative 1382 0.0
>29709.m001222 retinoblastoma-binding protein, putative
Length = 1275
Score = 1382 bits (697), Expect = 0.0
Identities = 1120/1261 (88%)
Strand = Plus / Plus
Query: 1 atggggaaagacgaagaggaaatgagaggggagatagaggagaggctcataaacgaagaa 60
||||| ||||| ||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct: 1 atgggaaaagatgaagaagaaatgagaggggagatagaggagagactgattaacgaagaa 60
Query: 61 tacaaaatatggaaaaagaacactccttttctttacgatctggttatcacccatgccctc 120
||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 61 tacaaaatatggaaaaagaacacgccatttctatacgatctggtgataactcatgccctc 120
Query: 121 gaatggccttcccttacagtcgagtggttaccggaccgcgaggagcctccgggcaaggac 180
|| ||||||||||| || ||||| ||| | || ||||||||||||||||| | |||||
Sbjct: 121 gagtggccttccctcactgtcgaatggctgccagaccgcgaggagcctcctgataaggat 180
Query: 181 tactccaaccagaagatgattctcggcactcacacctctgagaatgagcccaactacctc 240
|||||| |||||||||||| || || || |||||||| ||||| ||||| ||||||||
Sbjct: 181 tactccgtccagaagatgatccttgggacccacacctccgagaacgagcctaactacctt 240
Query: 241 atgctcgcccaggtccagcttcccctcggtgatgctgagaacgatgcccgccactacgac 300
||||| |||||||||||||||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 241 atgctggcccaggtccagcttcccctcgatgatgccgagaatgacgcccgccactacgac 300
Query: 301 gatgatcgctctgatttcggtggctttggagctgccaacggcaaggtccaaataattcag 360
|| |||||||| ||| | ||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 301 gacgatcgctccgatatgggtgggtttggagcagccaacggcaaagtccaaatcattcag 360
Query: 361 cagattaatcacgatggagaagttaaccgggctcgttatatgcctcaaaacccttttata 420
|| || ||||||||||| || || ||| |||||||||| ||||| ||||||||||| ||
Sbjct: 361 caaatcaatcacgatggcgaggtcaacagggctcgttacatgccccaaaaccctttcatc 420
Query: 421 attgccaccaagactgtgagtgctgaagtttatgtctttgactacagcaagcacccatct 480
|||||||| ||||| || ||||| ||||| ||| |||||||||||||||||||||| ||
Sbjct: 421 attgccacaaagaccgtcagtgcagaagtctatctctttgactacagcaagcacccttca 480
Query: 481 aagccgcctctcgacggtacctgtaatcccgatttgaggctgaggggtcacagcactgaa 540
||||| ||||| ||||| | ||| |||||||||| || |||| || ||||||||||||
Sbjct: 481 aagccccctctggacggcgcttgttctcccgatttgcggttgagaggccacagcactgaa 540
Query: 541 ggttatggattgtcttggagtaagttcaaacaaggccacttgcttagcggttctgatgat 600
|| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 541 ggatacggattgtcctggagtaagtttaaacaaggtcacttgcttagcggttctgatgat 600
Query: 601 gctcaaatttgcttgtgggacatcgattccactcccaagaacaggaccctagatgctatg 660
|||||||| ||||| ||||||||| |||| ||||| || |||| | |||| |||||| |
Sbjct: 601 gctcaaatatgcttatgggacatcaattctactcctaaaaacaagtcccttgatgctttc 660
Query: 661 caaacctttaaagttcatgaaggcgttgtagaagatgtagcatggcatcttagacatgaa 720
|||| |||||| ||||||||||||||||| |||||||| || |||||||| || || |||
Sbjct: 661 caaatctttaaggttcatgaaggcgttgttgaagatgttgcctggcatctcaggcacgaa 720
Query: 721 tacttatttggctctgttggggatgatcaatacctactcatatgggatctcagaactcca 780
||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct: 721 tacttatttggctctgttggggatgatcaatacctcctcatatgggatctccgcactcct 780
Query: 781 gcagtcaccaagcctgtccaatcagtagtcgctcaccagagtgaggttaattgcttagct 840
| ||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||
Sbjct: 781 tctgtctccaaacctgtccaatctgttgttgctcaccagagtgaggttaattgcttggct 840
Query: 841 tttaatcctttcaatgaatgggttgttgcaacgggatccactgataaaactgtgaagtta 900
|||||||||||||||||||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 841 tttaatcctttcaatgaatgggttgtggccacgggatctacagataaaactgtcaagttg 900
Query: 901 tttgatatacgtaagatcaacacagcgcttcacacatttgactgtcacaaggaggaggtt 960
||||||||||| |||||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct: 901 tttgatatacggaagatcaatacagcacttcacacatttgattgccacaaggaggaggtt 960
Query: 961 ttccaagttggatggaatcctaagaatgaaactatcttagcttcttgttgcctcggtaga 1020
||||||||||| ||||| || || ||||||||||| ||||||||||||||||| || |||
Sbjct: 961 ttccaagttgggtggaaccccaaaaatgaaactattttagcttcttgttgccttggcaga 1020
Query: 1021 aggctcatggtgtgggatcttagcaggattgatgaagaacagacaccagaagatgctgaa 1080
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 1021 aggctcatggtgtgggatcttagcaggatcgatgaagaacagacacctgaggatgctgaa 1080
Query: 1081 gatggtcctccagaactgctttttattcatggtggtcacacaagtaaaatatcagatttt 1140
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1081 gatggtcctccagagttgctttttattcatggtggtcacacaagtaaaatatcggatttt 1140
Query: 1141 tcgtggaatccttgtgaagactgggttattgcaagtgtggctgaagataacatccttcag 1200
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1141 tcgtggaatccttgtgaggactgggttattgcaagtgtagctgaagataacatacttcag 1200
Query: 1201 atatggcaaatggcagagaatatctaccacgatgaagatgacatgcctggggatgaatcc 1260
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1201 atatggcagatggcagagaatatctaccatgatgaagatgacatacctggggatgaatcc 1260
Query: 1261 a 1261
|
Sbjct: 1261 a 1261