Jatropha Genome Database

JcCA0029051.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029051.30 + phase: 0 /partial
         (1064 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006435 origin recognition complex subunit, putative            404   e-112

>30169.m006435 origin recognition complex subunit, putative
          Length = 2535

 Score =  404 bits (204), Expect = e-112
 Identities = 376/432 (87%), Gaps = 1/432 (0%)
 Strand = Plus / Plus

                                                                        
Query: 634  gtttattacaagaaagtggtgtatgatggtggtgaatttgaggtaggagatgatgtgtat 693
            |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 478  gtttattataagaaagtagtgtatgatggtggtgaatttgaggtaggtgatgatgtgtat 537

                                                                        
Query: 694  gtgaagaggagagaggacgccagctccgatgatgaggacccagaagtggaggaatgtaga 753
            |||||||||||||| || || || || |||  ||| || |||||||||||||| ||||||
Sbjct: 538  gtgaagaggagagatgatgctagttctgatattgatgatccagaagtggaggagtgtaga 597

                                                                        
Query: 754  gtatgcttcaaagcagggaaagcggtaatgcttgaatgcgatgattgtttaggtggtttt 813
            || ||||| ||||||||||||||  ||||| ||||||| ||||| |||||||| || |||
Sbjct: 598  gtgtgctttaaagcagggaaagctataatgattgaatgtgatgactgtttaggcgggttt 657

                                                                        
Query: 814  cacttgaagtgcttgaagcctcctctgaaggaggtccctgaaggggattggatttgtggg 873
            || || |  |||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 658  catttaagatgcttgaagcctcctctgaaggtggtacctgagggggattggatttgtggg 717

                                                                        
Query: 874  ttctgcgaggccaggaaattaggtaaggaggttgagttgccaaagtcgcctgaagggaaa 933
            ||||||||||| |||||||| |||||||||||| |||||||||   | || || ||||||
Sbjct: 718  ttctgcgaggctaggaaattgggtaaggaggttaagttgccaacaccaccggaggggaaa 777

                                                                        
Query: 934  aaacgttctagaaccttgagggagaaacttctttccagtgacttgtgggctgtccgaatt 993
            |||||   | |||| ||||||||||| ||||| || ||||| || |||||||  || |||
Sbjct: 778  aaacgcgttcgaacattgagggagaagcttctctctagtgatttatgggctgcacgcatt 837

                                                                        
Query: 994  gagagtttgtggaaggaggtggatggtagctattggtttaaggggcgatggtatatta-t 1052
            ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
Sbjct: 838  gagagtttgtggaaggaggtggatggtagctattggtgtaaagggcgatggtacattatt 897

                        
Query: 1053 ccagaagagact 1064
            || |||||||||
Sbjct: 898  cctgaagagact 909



 Score = 61.9 bits (31), Expect = 7e-09
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 491 tcgaggtttcattctctcctgtatcaccagatcaactggataccaggaagaggaaatggc 550
           ||||||||||||| |||||| ||||||| |||||| |||| ||||  || |||||| || 
Sbjct: 311 tcgaggtttcattttctcctatatcacccgatcaattggagaccaaaaaaaggaaaagga 370

                          
Query: 551 gtgaagagaaagaga 565
           | |||||||||||||
Sbjct: 371 gcgaagagaaagaga 385