Jatropha Genome Database

JcCA0028741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0028741.10 - phase: 0 
         (582 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28327.m000358 Chorismate synthase, chloroplast precursor, putative    480   e-135

>28327.m000358 Chorismate synthase, chloroplast precursor, putative
          Length = 1308

 Score =  480 bits (242), Expect = e-135
 Identities = 422/482 (87%)
 Strand = Plus / Plus

                                                                        
Query: 22   attcgagtaaaaggggattccattggtggagtggtcacatgcattgtgaggaatgcccca 81
            ||||| |||| ||| |||||  ||||||| || |||||||||||||||||||||| ||||
Sbjct: 748  attcgtgtaagaggagattctgttggtggtgttgtcacatgcattgtgaggaatgtccca 807

                                                                        
Query: 82   tgtgggcttggttcgccagtatttgacaaacttgaagccgagtttgctaaagctctcttg 141
             ||||||||||||| ||||| || |||||||||||||| ||||| ||||||||| |  ||
Sbjct: 808  cgtgggcttggttcaccagttttcgacaaacttgaagctgagttggctaaagctgttatg 867

                                                                        
Query: 142  tcactacctgcgtcaaagggctttgaagttggcagtgggtttgcaggcacttttttgact 201
            |||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 868  tcactacctgcaacaaagggctttgaatttggcagtgggtttgcaggcacttttctgact 927

                                                                        
Query: 202  ggcagtgaacataatgatgaattttaccttgacgaacatggaaagattaggacaagaaga 261
            ||||||||||||||||||||||||||| | || ||||||||||| || |||||  ||| |
Sbjct: 928  ggcagtgaacataatgatgaattttacatggaagaacatggaaaaatcaggactcgaaca 987

                                                                        
Query: 262  aatcgttctggtgggatacaggaaggaatttccaatggtgaaattataaaaatgagagtc 321
            |||||||||||||| |||||||  || || ||||||||||||| |||| | |||||| | 
Sbjct: 988  aatcgttctggtggaatacagggcgggatatccaatggtgaaactatatatatgagaata 1047

                                                                        
Query: 322  gctttcaagccaacagctacaatatcaaagaagcaaaatacagtgacaagagatagaatg 381
            ||||||||||||||| ||||||||  |||||||||| ||||||| || |||||||   | 
Sbjct: 1048 gctttcaagccaacatctacaataggaaagaagcaacatacagtcactagagataaggta 1107

                                                                        
Query: 382  gagatagaactaattgcttgcggtcgccatgatccttgtgttgtcccacgagcggtacct 441
            ||||  |||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 1108 gagaccgaactaattgctcgtggtcgccatgatccttgtgttgtcccacgagcggtgcct 1167

                                                                        
Query: 442  atggtagaagccatggtagctctggttctcgtggaccagttgatggcacatcatgcacag 501
            ||||||||||||||||||||  ||||||| ||||||||||||||||| ||  ||||||||
Sbjct: 1168 atggtagaagccatggtagccttggttctggtggaccagttgatggcgcaatatgcacag 1227

              
Query: 502  tg 503
            ||
Sbjct: 1228 tg 1229