Jatropha Genome Database

JcCA0025111.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0025111.30 + phase: 0 
         (474 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008936 mads box protein, putative                              266   1e-70

>30174.m008936 mads box protein, putative
          Length = 474

 Score =  266 bits (134), Expect = 1e-70
 Identities = 347/415 (83%), Gaps = 6/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 63  aactgatgaaaacatgcagcatc---tgaagactgaagctgcaagcatggttaagaaaat 119
           |||||||||||||||||||||||   ||||| | ||||||| || | || | ||||| ||
Sbjct: 63  aactgatgaaaacatgcagcatcaactgaagtccgaagctggaaacttgatgaagaagat 122

                                                                       
Query: 120 agaacaccttgaaactgctaaaaggaaattactgggtgaaggtctgggtttatgcactct 179
           ||| | |||||||    | ||||||||| |||| ||  ||||| |||||| ||||| |||
Sbjct: 123 agagctccttgaagtatcgaaaaggaaactactaggacaaggtttgggttcatgcaatct 182

                                                                       
Query: 180 tgaagaactacagcagatagaacaacagttggggaggagtgtaagcagcattagagctag 239
           ||| |||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct: 183 tgaggaactacaacagatagaacaacagttggagaagagtgtaagcagcatcagagctag 242

                                                                       
Query: 240 aaagaatcaggttttcaaagaacagattgagcgactacaagaaaaggagagactattggc 299
           |||||||||||||||||||||||||||||||| |||| |||||||||||| || ||||||
Sbjct: 243 aaagaatcaggttttcaaagaacagattgagcaactaaaagaaaaggagaaacaattggc 302

                                                                       
Query: 300 agctgaaaatgcaagactctcggaaaagtgtgggatccaaccgttgcaagggtttaaaca 359
           ||||||||||||||| || || |||||||||||  ||||| | |||| ||| || ||| |
Sbjct: 303 agctgaaaatgcaaggctgtctgaaaagtgtggtgtccaagcattgccaggcttgaaaga 362

                                                                       
Query: 360 gttaggagaacaaaacatgcccagtgaagaaagtagcccagtttcagatgtggagactga 419
           |  ||  ||| |||| |  ||    |||||| ||||||||||||||||||||||||||||
Sbjct: 363 g-cag--gaagaaaatagaccatacgaagaaggtagcccagtttcagatgtggagactga 419

                                                                  
Query: 420 acttttcattgggctaccggaaaccagaaataagcgttgccgtccaagaaattga 474
           |||||||||||| | ||| ||||| ||||  ||||| |  | |||||||||||||
Sbjct: 420 acttttcattggaccaccagaaacaagaacgaagcgctttcctccaagaaattga 474