Jatropha Genome Database
- JcCA0020841.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0020841.20 - phase: 0 /pseudo/partial
(249 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30190.m011215 tubulin beta chain, putative 248 1e-65
30075.m001163 tubulin beta chain, putative 119 8e-27
29785.m000970 tubulin beta chain, putative 103 5e-22
30170.m014190 tubulin beta chain, putative 100 7e-21
28102.m000107 tubulin beta chain, putative 94 5e-19
27798.m000603 tubulin beta chain, putative 90 7e-18
29751.m001813 tubulin beta chain, putative 86 1e-16
30190.m011194 tubulin beta chain, putative 82 2e-15
29785.m000971 tubulin beta chain, putative 80 7e-15
30147.m013736 tubulin beta chain, putative 56 1e-07
>30190.m011215 tubulin beta chain, putative
Length = 1338
Score = 248 bits (125), Expect = 1e-65
Identities = 206/233 (88%)
Strand = Plus / Minus
Query: 14 acatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccagtta 73
|||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 356 acatcaagaacagagtcgatcaattctgctccttcggtataatgccctttagcccagtta 297
Query: 74 ttaccagccccattttggccaaaaacaaaattatcaggcctaaagattttcccaaatgga 133
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | |||
Sbjct: 296 ttaccagctccattttggccaaaaacaaaattgtcaggcctaaagattttaccataagga 237
Query: 134 ccagttctcaagctatccatggtccctggctcaaggtctactaaaacagctctggggacg 193
||||| || ||||| |||||||| ||||| ||||| || | ||| |||||||| || |||
Sbjct: 236 ccagtccttaagctgtccatggtacctggttcaagatccattaacacagctctaggcacg 177
Query: 194 tagcggccaccactggcctcgttatagtaaacattaaccctctcaagttgaac 246
|| | ||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct: 176 tacctgccaccactagcttcgttgtagtaaacattaactctctcaagttgaac 124
>30075.m001163 tubulin beta chain, putative
Length = 1335
Score = 119 bits (60), Expect = 8e-27
Identities = 117/136 (86%)
Strand = Plus / Minus
Query: 2 tctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccct 61
|||||||| |||||||| ||||||||||| | || || ||||||||||| ||||| |||
Sbjct: 368 tctttcctgacaacatcgagaacagaatcaatcaattcagctccttcagtgtaatgtcct 309
Query: 62 ttagcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagatt 121
|||||||| ||||||||||| ||| ||| |||||||||||||||||||| ||||||||
Sbjct: 308 ttagcccaattattaccagcaccagattgaccaaaaacaaaattatcaggtctaaagatc 249
Query: 122 ttcccaaatggaccag 137
| ||||| |||||||
Sbjct: 248 tgaccaaaaggaccag 233
>29785.m000970 tubulin beta chain, putative
Length = 1245
Score = 103 bits (52), Expect = 5e-22
Identities = 136/164 (82%)
Strand = Plus / Minus
Query: 5 ttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgcccttta 64
|||||||||||||| | ||| | ||| | || ||| ||||| ||||||||||| || |||
Sbjct: 365 ttcctcacaacatctaaaaccgcatcaatcaactcagctccctcagtataatgaccctta 306
Query: 65 gcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagattttc 124
||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| |
Sbjct: 305 gcccagttattaccagcaccagactgtccaaaaacaaagttatcaggcctaaagatctga 246
Query: 125 ccaaatggaccagttctcaagctatccatggtccctggctcaag 168
||| | |||||||| |||| |||||||| || || ||||||||
Sbjct: 245 ccataaggaccagtcctcacactatccatagtaccaggctcaag 202
>30170.m014190 tubulin beta chain, putative
Length = 1347
Score = 99.6 bits (50), Expect = 7e-21
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
|||||||||||||||| ||| | || ||| ||||| ||||| ||||| |||||||||||
Sbjct: 365 acaacatcaagaacagcatcaatcaactcggctccctcagtgtaatgacctttagcccaa 306
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcaggcctaaagat 120
||||||||||| ||| ||||||||| || || |||||||||||||||||
Sbjct: 305 ttattaccagcaccagattggccaaacacgaagttatcaggcctaaagat 256
>28102.m000107 tubulin beta chain, putative
Length = 1338
Score = 93.7 bits (47), Expect = 5e-19
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 5 ttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgcccttta 64
|||||||||||||||||||| ||||| | ||||| || |||||||| ||||| |||||
Sbjct: 365 ttcctcacaacatcaagaactgaatcaattagctcagcaccttcagtgtaatggcctttg 306
Query: 65 gcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagattttc 124
|||||||| || ||||||||| || || |||||||| ||||| |||| ||| || | |
Sbjct: 305 gcccagttgtttccagccccagactgtccgaaaacaaagttatcgggccgaaaaatctgc 246
Query: 125 ccaaatggaccagttctcaagctatccatggtccctggctcaaggtc 171
||| |||| || || || | ||||||||| || ||||||||||||||
Sbjct: 245 ccatatgggcctgtcctgatgctatccatagtgcctggctcaaggtc 199
>27798.m000603 tubulin beta chain, putative
Length = 1335
Score = 89.7 bits (45), Expect = 7e-18
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
||||||||||| |||||||| | || ||| || ||||||||||||||||||||||||||
Sbjct: 359 acaacatcaagcacagaatcaatcaactcggcaccttcagtataatgccctttagcccaa 300
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcagg 111
|| || ||||| ||| ||| || |||||||||||||||||
Sbjct: 299 ttgttgccagcaccagattgaccgaaaacaaaattatcagg 259
>29751.m001813 tubulin beta chain, putative
Length = 1638
Score = 85.7 bits (43), Expect = 1e-16
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 11 acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
|||||||||||||||||||| | || || || |||||||||||||| |||||||||||
Sbjct: 650 acaacatcaagaacagaatcaataagttcagcaccttcagtataatgacctttagcccaa 591
Query: 71 ttattaccagccccattttggccaaaaacaaaattatcaggcctaaa 117
|| |||||||| ||| || ||||||||||| |||||||| |||||
Sbjct: 590 ttgttaccagcaccagactgaccaaaaacaaagttatcaggtctaaa 544
>30190.m011194 tubulin beta chain, putative
Length = 1341
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 2 tctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccct 61
|||||||| |||||||||||||||||||| | || ||| || ||||||||||||||||||
Sbjct: 368 tctttcctaacaacatcaagaacagaatcaatcaactcagcaccttcagtataatgccct 309
Query: 62 ttagcccagttattacc 78
|| ||||| || |||||
Sbjct: 308 ttcgcccaattgttacc 292
>29785.m000971 tubulin beta chain, putative
Length = 1341
Score = 79.8 bits (40), Expect = 7e-15
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 5 ttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgcccttta 64
|||||||||||||| | ||| | ||| | || ||| ||||| ||||||||||| || |||
Sbjct: 365 ttcctcacaacatctaaaaccgcatcaatcaactcggctccctcagtataatgaccctta 306
Query: 65 gcccagttattaccagccccattttggccaaaaacaaaattatcaggcctaaagat 120
||||||||||||||||| ||| || ||||| ||||| || ||||||||||||||
Sbjct: 305 gcccagttattaccagcaccagactgtccaaacacaaagttgtcaggcctaaagat 250
>30147.m013736 tubulin beta chain, putative
Length = 1347
Score = 56.0 bits (28), Expect = 1e-07
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 2 tctttcctcacaacatcaagaacagaatcgaccagctctgctccttcagtataatgccct 61
|||||||| |||||||| ||||| || || | || ||| |||||||| ||||| || |||
Sbjct: 368 tctttcctaacaacatcgagaaccgagtcaatcaactcagctccttcggtatagtgacct 309
Query: 62 ttagcccagttattaccagc 81
|| ||||||||||| |||||
Sbjct: 308 ttggcccagttattcccagc 289