Jatropha Genome Database
- JcCA0019701.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0019701.10 + phase: 0
(420 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29647.m002053 histone h2a, putative 387 e-107
30128.m008694 histone h2a, putative 167 7e-41
29842.m003686 histone h2a, putative 121 4e-27
28166.m001045 histone h2a, putative 60 1e-08
30128.m008813 histone h2a, putative 58 4e-08
>29647.m002053 histone h2a, putative
Length = 420
Score = 387 bits (195), Expect = e-107
Identities = 327/371 (88%)
Strand = Plus / Plus
Query: 1 atgagttccggaggatcaaccaagggaggcagaggcaagccgaagtcatcaaaatcggtt 60
|||||||| ||||| |||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct: 1 atgagttcgggaggggcaacaaagggtggcagaggcaaacccaagtcttcaaaatcggtg 60
Query: 61 tccagatctcaaaaggctggtctccagtttcccgtcggtcgtatcgcccgttttctcaaa 120
||||||||||| ||||||||||| ||||| || || || |||||||||||||||||||||
Sbjct: 61 tccagatctcagaaggctggtcttcagttccctgttggccgtatcgcccgttttctcaaa 120
Query: 121 gctggaaagtacgccgatcgcgtcggtgctggcgcccccgtttatctctccgctgtcctc 180
|| ||||||||||| ||||| || ||||| ||||| || || ||||| || || ||||||
Sbjct: 121 gccggaaagtacgctgatcgtgttggtgccggcgctcctgtctatctttcggccgtcctc 180
Query: 181 gagtacctcgctgctgaggttcttgaacttgctggcaatgctgctagggacaacaagaaa 240
||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 gagtatcttgctgctgaggtccttgaacttgctggcaatgctgcaagggacaacaagaag 240
Query: 241 aaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaagagcttagcaag 300
||||| || || || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 241 aaccgcattgttcctaggcacattcagcttgctgtgaggaatgatgaggagctcagcaag 300
Query: 301 ctcttgggaactgttactattgcaaatgggggtgttttgccaaatatccatcaaaatctg 360
||||||||||||||||||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 301 ctcttgggaactgttactattgcaaatggtggtgttttgcctaacattcatcagaatcta 360
Query: 361 ttgccaaagaa 371
||||| |||||
Sbjct: 361 ttgcctaagaa 371
>30128.m008694 histone h2a, putative
Length = 423
Score = 167 bits (84), Expect = 7e-41
Identities = 270/332 (81%)
Strand = Plus / Plus
Query: 10 ggaggatcaaccaagggaggcagaggcaagccgaagtcatcaaaatcggtttccagatct 69
|||||||||||||||||||| ||||| ||||| ||| | ||||| || || ||||| ||
Sbjct: 13 ggaggatcaaccaagggaggaagaggaaagccaaaggcttcaaagtccgtgtccaggtca 72
Query: 70 caaaaggctggtctccagtttcccgtcggtcgtatcgcccgttttctcaaagctggaaag 129
|| |||||||| | |||||||| || ||| | || || | |||||||| ||||||||
Sbjct: 73 cagaaggctggattgcagtttcctgttggtagaattgctagatttctcaaggctggaaaa 132
Query: 130 tacgccgatcgcgtcggtgctggcgcccccgtttatctctccgctgtcctcgagtacctc 189
|||||||| || |||||||| || || ||||| |||||||| |||||||||||||| |||
Sbjct: 133 tacgccgagcgtgtcggtgccggagctcccgtctatctctctgctgtcctcgagtatctc 192
Query: 190 gctgctgaggttcttgaacttgctggcaatgctgctagggacaacaagaaaaaccgtatc 249
||||||||||| | ||| | ||||| ||||| || || || || ||||| || | ||
Sbjct: 193 gctgctgaggtattggaattggctgggaatgcagcgagagataataagaagaatagaata 252
Query: 250 gtcccaaggcacattcagcttgctgtgaggaatgatgaagagcttagcaagctcttggga 309
|| |||||||| || ||| | || ||||||||||||||||| | || ||||| ||||||
Sbjct: 253 gtgccaaggcatatacagttagcagtgaggaatgatgaagaattgagtaagctgttggga 312
Query: 310 actgttactattgcaaatgggggtgttttgcc 341
||||||||||||| ||||| |||||||||||
Sbjct: 313 tctgttactattgccaatggtggtgttttgcc 344
>29842.m003686 histone h2a, putative
Length = 399
Score = 121 bits (61), Expect = 4e-27
Identities = 208/257 (80%)
Strand = Plus / Plus
Query: 85 cagtttcccgtcggtcgtatcgcccgttttctcaaagctggaaagtacgccgatcgcgtc 144
|||||||| || |||||||| || || || | ||||| ||||| |||||||| ||||||
Sbjct: 76 cagtttccagtaggtcgtattgctcgcttcttgaaagccggaaaatacgccgagcgcgtc 135
Query: 145 ggtgctggcgcccccgtttatctctccgctgtcctcgagtacctcgctgctgaggttctt 204
|||||||||||||| ||||||||| | || || || ||||| || ||||||||||| |
Sbjct: 136 ggtgctggcgcccctgtttatctcgctgccgttcttgagtatcttgctgctgaggtattg 195
Query: 205 gaacttgctggcaatgctgctagggacaacaagaaaaaccgtatcgtcccaaggcacatt 264
||| | ||||| ||||| || |||||||||||||| ||| | || || |||||||||||
Sbjct: 196 gaattagctgggaatgcagcaagggacaacaagaagaacagaatagtgccaaggcacatc 255
Query: 265 cagcttgctgtgaggaatgatgaagagcttagcaagctcttgggaactgttactattgca 324
|| | || | |||||||| || || | |||||||| | |||||||||||||||||
Sbjct: 256 caattagcaatcaggaatgacgaggaattaagcaagcttcttggaactgttactattgct 315
Query: 325 aatgggggtgttttgcc 341
||||| |||||||||||
Sbjct: 316 aatggtggtgttttgcc 332
>28166.m001045 histone h2a, putative
Length = 408
Score = 60.0 bits (30), Expect = 1e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 229 gacaacaagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaa 288
||||||||||| | ||| || || ||| | |||||||| | ||||||||||||||||||
Sbjct: 220 gacaacaagaagacccgaattgttccacgacacattcaattagctgtgaggaatgatgaa 279
Query: 289 gagcttagcaagct 302
|| |||||||||||
Sbjct: 280 gaacttagcaagct 293
>30128.m008813 histone h2a, putative
Length = 441
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 76 gctggtctccagtttcccgtcggtcgtatcgcccgttttctcaaa 120
|||||||| || |||||||||||||||||||| || |||||||||
Sbjct: 82 gctggtcttcaatttcccgtcggtcgtatcgctcggtttctcaaa 126