Jatropha Genome Database

JcCA0015332.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0015332.10 + phase: 0 /pseudo/partial
         (1206 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003304 zinc finger protein, putative                           123   3e-27
29889.m003305 Anter-specific proline-rich protein APG, putative       117   2e-25

>29889.m003304 zinc finger protein, putative
          Length = 1077

 Score =  123 bits (62), Expect = 3e-27
 Identities = 113/130 (86%)
 Strand = Plus / Plus

                                                                       
Query: 869 tgctcgaagagcttactacaaatcttataggatcaaactatatctatgcaaatacgtatg 928
           |||| |||||||||  | ||||||||| ||||||||| | | ||  ||||||||| ||||
Sbjct: 755 tgcttgaagagcttcatgcaaatcttacaggatcaaagtttgtccttgcaaatacttatg 814

                                                                       
Query: 929 ctatgacagaagatatagtccgaaactacatatcatatggatttgagattgtagatgaag 988
           ||||||||||||||||| | |||||||| ||||||||||||||||| | |||||| ||||
Sbjct: 815 ctatgacagaagatataattcgaaactatatatcatatggatttgaaaatgtagacgaag 874

                     
Query: 989 catgttgcca 998
           ||||||||||
Sbjct: 875 catgttgcca 884



 Score = 85.7 bits (43), Expect = 6e-16
 Identities = 115/139 (82%), Gaps = 5/139 (3%)
 Strand = Plus / Plus

                                                                       
Query: 212 gttccatcaggaagatacacaaatggtagattaagcaggaattaggcttgaaaattttaa 271
           ||||| ||||||||||||||||||||||||  |     ||||  |||||||||| ||  |
Sbjct: 214 gttccttcaggaagatacacaaatggtagaaca-----gaatctggcttgaaaagttgca 268

                                                                       
Query: 272 ctcctccttacttggctccaacagccactggagatgtgcttctaaagggaatcaactatg 331
           ||||||||||||||| ||||||| |||||||| ||||  |||| |||||  |||||||||
Sbjct: 269 ctcctccttacttgggtccaacaaccactggaaatgttattctgaagggtgtcaactatg 328

                              
Query: 332 cttcttctggagcaggaat 350
           ||||| ||| | |||||||
Sbjct: 329 cttctgctgcatcaggaat 347


>29889.m003305 Anter-specific proline-rich protein APG, putative
          Length = 855

 Score =  117 bits (59), Expect = 2e-25
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                       
Query: 256 ggcttgaaaattttaactcctccttacttggctccaacagccactggagatgtgcttcta 315
           |||||||| | ||| |||||||||||||||||||||||  ||||||||||||||||||| 
Sbjct: 247 ggcttgaacaatttcactcctccttacttggctccaacgaccactggagatgtgcttctg 306

                                              
Query: 316 aagggaatcaactatgcttcttctggagcaggaat 350
           |||||  |||||||||||||||||| |||||||||
Sbjct: 307 aagggtgtcaactatgcttcttctgcagcaggaat 341