Jatropha Genome Database
- JcCA0013701.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0013701.10 + phase: 0 /pseudo/partial
(822 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30162.m001290 transcription factor, putative 722 0.0
29682.m000576 transcription factor, putative 155 5e-37
30170.m013806 transcription factor, putative 133 2e-30
>30162.m001290 transcription factor, putative
Length = 1548
Score = 722 bits (364), Expect = 0.0
Identities = 646/742 (87%), Gaps = 11/742 (1%)
Strand = Plus / Plus
Query: 1 gtgacatcatacaagttatggcgacaagtgggagaatcatttaatcccccaaagacctgc 60
|||||||||| |||||| ||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 790 gtgacatcatgcaagttgtggcgtcaagtgggagaatcattcagacccccaaagacctgt 849
Query: 61 actactgtttcttggacattccgaaatttttatgagaaggcattacttgaatatgaaaag 120
|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct: 850 actactgtttcttggacatttcgaatattttatgaaaaggcattacttgaatatgaaaag 909
Query: 121 cataaagtgcgttgcggggagctcccttttcctgatggttctttgacagagcccgtaagg 180
|||||| ||||| ||||||||||| || |||||||| | ||||||||||| | |||
Sbjct: 910 cataaaatgcgtaatggggagctccccttctctgatggtcccttgacagagccaatcagg 969
Query: 181 gttgaaaaccagcttcattgcagactcctggaaatcaagctcttggatcaggtagggcaa 240
|||||||| ||| | || |||| ||||||||| ||||||||||||||
Sbjct: 970 gttgaaaatcagg-----------ccccaggaagtcaagctctcggatcaggtagggctc 1018
Query: 241 gaagggatgctgctgctcgtgccatgcagggatggcactctcagcgtcttctcggtaatg 300
|||| || ||||| |||||||||||| |||| |||||||| ||||||||||| |||||||
Sbjct: 1019 gaagagacgctgcagctcgtgccatggaggggtggcactcccagcgtcttcttggtaatg 1078
Query: 301 gtcaggtttgtgatccaatcattaaggataaaagcttgaattccacacaaaagggtgaca 360
||||||||||| ||||||| ||||||||||| | ||||||||| |||| ||||||||||
Sbjct: 1079 gtcaggtttgtcatccaattattaaggataagaacttgaattctacaccgaagggtgaca 1138
Query: 361 agcagctgaaaacaaatggtttgctgaagcgtaaaaaaccatcaaccgttgagcgagctg 420
||| ||| ||||| || ||||| |||||||||||||| ||||| | |||||||| |||
Sbjct: 1139 agctgctaaaaactaacggtttactgaagcgtaaaaagccatcgagtgttgagcgttctg 1198
Query: 421 tccatgttcctcacgtgaaaatgatgaagctacaagcggatacaatggtcattgatattg 480
||| |||||||||| ||||| ||||||| ||||| |||| ||||||| ||||||||||
Sbjct: 1199 tccttgttcctcacatgaaagcaatgaagccacaagtggattcaatggttattgatattg 1258
Query: 481 gacctccggctgactgggtgaagatcaatgtgcaaagaactaatgactgctttgaaatat 540
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1259 gacctccagctgattgggtgaagatcaatgtgcaaaaaactaatgactgctttgaaatat 1318
Query: 541 atgctttagttccagggcttcttcgtgaggaggtgcatgttcaatctgatccagcaggac 600
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 1319 atgctttagttccaggacttctgcgtgaggaggtgcatgtccaatctgatccagcaggac 1378
Query: 601 gcttgattatatcgggtcaaccagagcaactggataatccttggggtgtcacaccattta 660
||||||||||||| ||| | ||||||||| |||||||||| |||||||| ||||| ||||
Sbjct: 1379 gcttgattatatctggtaacccagagcaagtggataatccctggggtgtgacacccttta 1438
Query: 661 aaaaggttgtcagtttaccttcacgaattgatccacatcagacatctgctgtggtcaccc 720
||||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct: 1439 aaaaggttgtcagcttaccttccagaattgatccgcatcagacatctgctgtggttaccc 1498
Query: 721 tgcatggccaattatttgtgcg 742
|||||||||| || ||||||||
Sbjct: 1499 tgcatggccagttgtttgtgcg 1520
>29682.m000576 transcription factor, putative
Length = 1971
Score = 155 bits (78), Expect = 5e-37
Identities = 219/266 (82%)
Strand = Plus / Plus
Query: 489 gctgactgggtgaagatcaatgtgcaaagaactaatgactgctttgaaatatatgcttta 548
||||| ||||||||||||||||| || | ||| || || || |||||| | |||||||||
Sbjct: 1693 gctgattgggtgaagatcaatgtacagaaaacaaaagattgttttgaagtgtatgcttta 1752
Query: 549 gttccagggcttcttcgtgaggaggtgcatgttcaatctgatccagcaggacgcttgatt 608
|| || ||||||||||| || ||||||| |||||| || ||||||||||| || || ||
Sbjct: 1753 gtacctgggcttcttcgcgaagaggtgcgtgttcagtcagatccagcaggccgactggtt 1812
Query: 609 atatcgggtcaaccagagcaactggataatccttggggtgtcacaccatttaaaaaggtt 668
|| ||| |||| ||||| | |||||||||||||| |||||||| || |||||||||
Sbjct: 1813 attagtggtgaacctgagcatcctgataatccttggggcgtcacacccttcaaaaaggtt 1872
Query: 669 gtcagtttaccttcacgaattgatccacatcagacatctgctgtggtcaccctgcatggc 728
||||| ||||| ||| | ||||| |||||||| || || ||||| ||||||||||||||
Sbjct: 1873 gtcagcttaccgtcaaggattgacccacatcaaacttcagctgttgtcaccctgcatgga 1932
Query: 729 caattatttgtgcgtgtcccgtttga 754
||| ||||||| ||||| || |||||
Sbjct: 1933 caactatttgttcgtgtaccatttga 1958
Score = 105 bits (53), Expect = 4e-22
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 13 aagttatggcgacaagtgggagaatcatttaatcccccaaagacctgcactactgtttct 72
||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 1243 aagttgtggcggcaagtgggagaatcctttaaacccccaaagacatgtactactgtttca 1302
Query: 73 tggacattccgaaatttttatgagaaggcattacttgaatatgaaaagcataa 125
|||||||| ||| |||||||||||||||| | ||||| ||||| | ||||||
Sbjct: 1303 tggacatttcgaggtttttatgagaaggcacttcttgattatgagaggcataa 1355
>30170.m013806 transcription factor, putative
Length = 1350
Score = 133 bits (67), Expect = 2e-30
Identities = 229/283 (80%)
Strand = Plus / Plus
Query: 472 ttgatattggacctccggctgactgggtgaagatcaatgtgcaaagaactaatgactgct 531
||||| ||||||| || ||||| ||||||||||||||||||| | |||| || ||||
Sbjct: 1052 ttgatgttggaccccctgctgattgggtgaagatcaatgtgcgggaatctaaagattgct 1111
Query: 532 ttgaaatatatgctttagttccagggcttcttcgtgaggaggtgcatgttcaatctgatc 591
| || | |||||| |||| || |||||||| ||||||||||||| ||||| |||||||
Sbjct: 1112 tcgaggtgtatgctctagtccctgggcttctacgtgaggaggtgcgagttcagtctgatc 1171
Query: 592 cagcaggacgcttgattatatcgggtcaaccagagcaactggataatccttggggtgtca 651
| || ||||| || ||||| | |||||||||||||| || ||||||||||||||| | |
Sbjct: 1172 ctgctggacgtctggttataacaggtcaaccagagcagcttgataatccttggggtataa 1231
Query: 652 caccatttaaaaaggttgtcagtttaccttcacgaattgatccacatcagacatctgctg 711
|||| ||||| ||||| | || ||||||||| |||||||||| | |||||| ||||| |
Sbjct: 1232 caccctttaagaaggtcataagcttaccttcaagaattgatccgcttcagacctctgcgg 1291
Query: 712 tggtcaccctgcatggccaattatttgtgcgtgtcccgtttga 754
| || | ||| ||||||| | | | ||| |||||||| |||||
Sbjct: 1292 ttgtgagccttcatggccgactttatgttcgtgtcccatttga 1334
Score = 65.9 bits (33), Expect = 4e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 225 ggatcaggtagggcaagaagggatgctgctgctcgtgccatgcagggatggca 277
||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 814 ggatctggtagggcaaggagggatgctgcagctcgtgctatgcagggttggca 866