Jatropha Genome Database
- JcCA0012121.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0012121.10 + phase: 0 /pseudo/partial
(2208 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30115.m001231 DNA polymerase alpha catalytic subunit, putative 1970 0.0
>30115.m001231 DNA polymerase alpha catalytic subunit, putative
Length = 4581
Score = 1970 bits (994), Expect = 0.0
Identities = 1838/2121 (86%), Gaps = 3/2121 (0%)
Strand = Plus / Plus
Query: 91 ggtgctagggcacaaagagtagagtatcttctattgcatgcattccacgcaaagaaatat 150
|||||||||||||| ||||| |||||||||||| |||||||||| || |||||||| |||
Sbjct: 2458 ggtgctagggcacagagagtggagtatcttctactgcatgcatttcatgcaaagaagtat 2517
Query: 151 attgtaccagataagaattcctcttatgtaaaa---gaaacaaaaatgacaaaacggaga 207
|||||||| || |||||||||| | || ||||| || |||||||||||||| ||||||
Sbjct: 2518 attgtacctgacaagaattcctttcatctaaaaaaggagacaaaaatgacaaagcggaga 2577
Query: 208 ataaatcatggtggtgaggaaagaaatgccgaagagctggatactgatgatgccaatttt 267
||| || |||| | ||| |||| |||||| |||||| ||||||||||| |||||||||||
Sbjct: 2578 atacataatggcgttgaagaaaaaaatgctgaagagttggatactgatcatgccaatttt 2637
Query: 268 gataatgataatccagacaatgatcgtggaaaagggaaaaaaggtcctgcctatgcaggt 327
|||||||| | |||||| ||||| |||||||||||||||||||| ||||| |||| |||
Sbjct: 2638 gataatgacagtccagagaatgaccgtggaaaagggaaaaaaggccctgcttatgtaggc 2697
Query: 328 ggtttggttttggagcccaaaaaaggtttatatgacaaatatgtattgcttctggacttc 387
||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2698 ggtctagttttggagcccaaaaagggtctatatgacaaatatgtattgcttctggacttc 2757
Query: 388 aatagtctttacccttctatcattcaggagtataatatctgcttcacaacggttgaaaaa 447
||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 2758 aatagtctttatccttctattattcaggagtataatatttgcttcacaacagttgaaaaa 2817
Query: 448 tctacagatgggttagttccccgtttaccttctggcnnnnnnnctggagttttacctgag 507
||||||||||| || || || |||||||||||| | |||||||| |||| |||
Sbjct: 2818 tctacagatggattggtccctcgtttaccttctatcaaaacaactggagttctaccagag 2877
Query: 508 ttgctgaaaaatctagtggagaggagaagaatggttaagtcatggatgaaaaatgcttct 567
|||||||||||||| || |||||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 2878 ttgctgaaaaatctggtcgagaggaggagaatggtcaaatcatggatgaagaatgcatct 2937
Query: 568 ggtctcaaaatccagcagcttgacattcagcaacaggcattgaagctcactgctaatagt 627
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 2938 ggtctcaaggtccagcagcttgacattcagcaacaggcattaaagctcactgcaaatagt 2997
Query: 628 atgtatggatgccttgggttttccaattcaagattttatgcaaagcctcttgctgagctt 687
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 2998 atgtatggatgccttggattttcaaattcaagattttatgcaaagcctcttgcagagctt 3057
Query: 688 ataactctacaggggagggagattctacagagtactgtggatcttgttcaaaataatttg 747
|| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3058 attactctacaggggcgggagattctgcagagtactgtggatcttgttcaaaataatttg 3117
Query: 748 aacttagaggtcatatatggtgatacagattcaataatgatttatagtggactagatgat 807
||||| |||||||||||||| |||||||||||||| |||||||||||||| |||| |||
Sbjct: 3118 aacttggaggtcatatatggcgatacagattcaatcatgatttatagtggtttagaagat 3177
Query: 808 atcacaaaagcaaaagctattgcagggaaagtcatccaggaggttaacaagaagtatagg 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3178 atcacaaaagcaaaagctattgcagggaaagtcatccaggaggttaacaagaagtacagg 3237
Query: 868 tgtttagaaattgatcttgatggcttatataagagaatgttgcttctcaagaagaaaaaa 927
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 3238 tgtttggaaattgatcttgatggcttgtacaagagaatgttgcttctgaagaagaaaaaa 3297
Query: 928 tatgcagctgtcaaattgcagttcaaggatgggacaccatatgaggtcattgaacggaaa 987
||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 3298 tatgcagctgtcaaacttcagttcaaagatggtacaccatatgaggtcattgaacgtaaa 3357
Query: 988 ggtcttgacatggttcgccgtgactggagtttgctgtcaaaggaattgggggacttctgc 1047
||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||
Sbjct: 3358 ggtcttgacatggttcgccgtgactggagcttgctatcaaaggaattaggagatttctgc 3417
Query: 1048 cttgctcaaatcttgtctggggggtcatgtgaggacgtagtagaatcaatacataattca 1107
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 3418 cttgctcaaatcttgtctgggggatcatgtgaggatgtagttgaatcaatacataactcc 3477
Query: 1108 cttatgaaggttcaggaggatatgagaaatggacaagtagaactagagaaatatgtcatt 1167
||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| || | |||
Sbjct: 3478 cttatgaaggtacaggaggaaatgaggaatggacaagtagcacttgagaagtacattatt 3537
Query: 1168 acaaaatcattgactaaaccacctgaagcttatcctgatgccaaaaatcaacctcatgtt 1227
||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 3538 acaaagacattaactaaaccacctgaagcctaccctgatgccaaaaatcaacctcatgtt 3597
Query: 1228 cttgtggcactaagattgaagcaaatgggctatactacgggctgttctgcaggtgatact 1287
| || ||||||||||||||||| | ||||||||||| || || |||| ||||||||
Sbjct: 3598 atggtagcactaagattgaagcagagtggctatactactggttgctctgttggtgataca 3657
Query: 1288 gtaccatacatcatttgctctgagcaggaggcttcctcaggaagtatgacaggaattgcg 1347
|||||||| || ||||||| |||||||| ||| | | |||||| | ||||||||||
Sbjct: 3658 gtaccatatattatttgctgtgagcagggtgctactcctggaagttcgtcaggaattgct 3717
Query: 1348 cagcgtgcaagacatcctgatgaactgaaaaaagatgatgggaaatggatgattgacata 1407
|| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3718 caacgggctagacatcctgatgaattgaaaaaagatgatgggaaatggatgattgacata 3777
Query: 1408 gattactacttatcacaacaaattcatcctgtggtatctcgcctatgcgcttcaattcaa 1467
||||||||| | ||||| ||||| |||||||||||||| || || || ||||||||||||
Sbjct: 3778 gattactacctgtcacagcaaatccatcctgtggtatcacgtctgtgtgcttcaattcaa 3837
Query: 1468 ggcacaagcccagagcgtttggctgattgtttgggccttgactcatccaagttcaaaaat 1527
|| |||||||| || ||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct: 3838 ggaacaagcccggaacgtttggctgattgtctgggccttgactcatccaagtttcaaatt 3897
Query: 1528 aaatcaagtgaatcaattagcaatgacccttcaagctcacttttgtttgctgtcaatgac 1587
|||||||||||| | || | ||| || ||| | ||||||||||||||||||||||| ||
Sbjct: 3898 aaatcaagtgaagccataaacaacgatcctgctagctcacttttgtttgctgtcaacgat 3957
Query: 1588 gaggagagatatcggagttgtgagccattaatcttgtcatgtcccagctgctctaatact 1647
||||| |||||| |||| ||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 3958 gaggaaagatataggagctgtgagccattgctcttgtcatgtcccagttgctctggtact 4017
Query: 1648 tttgaatgtcctgccatcttcagttccattggtctgataatcggtgaaaagccaataaaa 1707
||||||||||| || ||||| |||||||| || | |||| ||| || |||| ||||
Sbjct: 4018 tttgaatgtcccgctgtcttcggttccatttgtacgtcaatcagtgcgaacccaacaaaa 4077
Query: 1708 ccacgagtaaaggaatctatgtctaatttctggcgcacaatgcgttgtcctagatgccca 1767
| | ||| |||||||| |||||||||||||| ||| |||||||| |||| |||||||
Sbjct: 4078 ctgcaggtagaggaatctgtgtctaatttctggtgcaggatgcgttgccctaaatgccca 4137
Query: 1768 gaagagggggatatgggtataatatcttctgcaataatagcaaaccaggtcaaaaggcaa 1827
||||| || |||| || | ||||||| ||||||| ||||||||||||| |||||||||
Sbjct: 4138 gaagaaggtgataccggcagaatatctcctgcaatgttagcaaaccaggtaaaaaggcaa 4197
Query: 1828 gtcgagggatttctttcagtgtactataagggcttaatgatgtgcgatgatgaaacttgc 1887
| ||||| || |||| |||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 4198 gcggaggggttcgtttctatgtactataaaggcttaatgacgtgtgatgatgaaacttgt 4257
Query: 1888 aaatataccacacgcagtctcaacttgcggcttgttggtgatgccgaaaaaggaactgtt 1947
|| ||| || ||||| || || | ||||| | || ||| | |||| |||||| |||
Sbjct: 4258 aagcatattacccgcagccttaatctacggctaataggcgattcagaaagaggaacagtt 4317
Query: 1948 tgcgcaaattatcctcgctgcaatggtcgtctcgtaagaaagtacaaagaagcagatctg 2007
|| |||| ||||||||||||||||| ||||| || |||||||||| |||||||| ||
Sbjct: 4318 tgtccaaactatcctcgctgcaatggccgtcttgtgagaaagtacactgaagcagaactc 4377
Query: 2008 tacaagcagctttcatatttctgctatctattggacactgtatattgcatcgaaaagatg 2067
|||||||||||||||| || ||||||||||||||| || || |||||| |||||||||
Sbjct: 4378 tacaagcagctttcattttactgctatctattggatacagtccgttgcatggaaaagatg 4437
Query: 2068 gacgctaacacaagaataccactagagaaagagttgagcaaaattcgaccaattgtggat 2127
|| || ||| |||||| |||||||||| || | | ||| || || || || || |||
Sbjct: 4438 gatgccggcactagaatatcactagagaagaagattaccaagatacggccgatggttgat 4497
Query: 2128 ttggcattatcaacagttaaaaagattagggatcggtgtgcttatggatgggtacagttg 2187
|||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct: 4498 ttggcagtatcaacagtgcagaagatcagggatcggtgtgcttatggatgggtacagttg 4557
Query: 2188 aacgacctagctgtcacagtt 2208
| |||| || ||||||||||
Sbjct: 4558 agcgacttaagtgtcacagtt 4578