Jatropha Genome Database
- JcCA0009771.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0009771.10 + phase: 0
(801 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m013744 sigma factor sigb regulation protein rsbq, putative 726 0.0
>30170.m013744 sigma factor sigb regulation protein rsbq, putative
Length = 801
Score = 726 bits (366), Expect = 0.0
Identities = 678/782 (86%)
Strand = Plus / Plus
Query: 13 cttttggaagctctcaacgtccgtgtggtcggctccggcgagaaaatccttgttctcgcc 72
||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 13 cttttagaagctctcaacgtccgtgttgtcggttccggcgacaaaattcttgttctagcc 72
Query: 73 catggaatcggcactgaccaatcagcttggcaacgcattcttccatttttcactcaaaac 132
|||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 73 catggattcggcactgaccaatcagcatggcaacgcattctgccctttttcactcaaaat 132
Query: 133 tacagtgtaatcctctacgacctcgtttgcgccggcagtgtcaatccgggttacttcgat 192
|| || ||||||| || ||||| ||||| || |||||||| ||||| | |||||| |||
Sbjct: 133 tatagcataatcctttatgaccttgtttgtgcaggcagtgttaatcccgattactttgat 192
Query: 193 tttagaagatatacgactctcgacgctttcgttgacgacttactttacattcttgacgct 252
|||||||| || || ||||||||||||| |||||| ||||| || ||||||||||||||
Sbjct: 193 tttagaaggtacacaactctcgacgcttacgttgatgacttgctcaacattcttgacgct 252
Query: 253 cttcgcgtccatcgctgtgcctacgttggtcactccgtctccgctatgattggcctttta 312
||||| ||| |||||||||| || ||||||||||| || ||||| |||||||| |||||
Sbjct: 253 cttcgtgtcgatcgctgtgcttatgttggtcactctgtttccgccatgattggtatttta 312
Query: 313 gcttccattaaacgccctgaactcttctccaaactcatcctcatcggcgcttctccaagg 372
|| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 313 gcctccattagacgccctgaactcttctctaaactcatcctcatcggtgcttctccaaga 372
Query: 373 ttcttgaatgacgtagattaccatggaggattcgagagagctgatatagagaatgttttc 432
||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 373 ttcttgaatgataaagattaccatggaggattcgagcgacctgatatagagaatgttttc 432
Query: 433 gctgcaatggaagcgaattacgaagcttgggtcaacggttttgcaccgttggccgtggga 492
||||||||||||||||||| || || ||||||||||||||||||||| | ||||| ||
Sbjct: 433 actgcaatggaagcgaattatgaggcatgggtcaacggttttgcaccgctagccgttggg 492
Query: 493 gcagatgtgccggctgccgttagagaatttagccggacgcttttcaatatgagacctgat 552
|| |||||||| ||||| ||||||||||||||| |||| |||||||||||||| || |||
Sbjct: 493 gctgatgtgcctgctgcggttagagaatttagcaggacccttttcaatatgaggccagat 552
Query: 553 ataacattatttgtgtcaagaaccgtttttaacagcgatctaagagggatattaggctta 612
|| || ||||||||||| ||||| |||||||| || ||||||||||| ||| ||||||||
Sbjct: 553 attactttatttgtgtcgagaacagtttttaatagtgatctaagaggtatactaggctta 612
Query: 613 gtcaaagcaccttgttgcataattcagacagctagggatgtgtccgtaccagcatcggta 672
||||| | ||| |||||||||||||||||||| | |||||| || ||||||||||||||
Sbjct: 613 gtcaaggtaccctgttgcataattcagacagccaaggatgtctcggtaccagcatcggtg 672
Query: 673 gccgagtatttgaagagtcatttaggtggccggagcacggtggagatattaagaacggaa 732
|| || ||||||| | ||||| |||||||||| ||||||||| |||||||| || ||
Sbjct: 673 gcagaatatttgagaatccatttgggtggccggaacacggtggaaatattaaggacagag 732
Query: 733 ggtcatttaccacatttgagtgctccagggctattggcccaagttctccgtcgagccctt 792
|||||||| |||||||| ||||| || | | ||||| ||||| ||||| |||||||||
Sbjct: 733 ggtcatttgccacatttaagtgccccggccttgttggctcaagtgctccggcgagccctt 792
Query: 793 tc 794
||
Sbjct: 793 tc 794