Jatropha Genome Database

JcCA0009731.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0009731.30 - phase: 0 
         (423 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002029 conserved hypothetical protein                          115   2e-25

>29647.m002029 conserved hypothetical protein
          Length = 513

 Score =  115 bits (58), Expect = 2e-25
 Identities = 236/295 (80%), Gaps = 9/295 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcttcgttttggtcattcttgacaatgtttattattttcatggcatattttgcttca 60
           |||||||| | || |||||||||| ||| |||  | |||||||||||||||||| | |||
Sbjct: 506 atggcttcctcttcgtcattcttggcaaagttcgtgattttcatggcatatttttcatca 447

                                                                       
Query: 61  ctagcttttacaagtcatgtagtacatgtacaattttctactatatcagcagcaccagca 120
           |||||||| |||  | | ||| |||||||||| |  |||||||||||||||||||| || 
Sbjct: 446 ctagctttaacatctgaagtactacatgtacagtactctactatatcagcagcacctgct 387

                                                                       
Query: 121 tttttacctgaagc-------tcctct--ttcttccccaccaacttcaagtttgtcacca 171
            | || |||||| |       ||||||  |||| | || ||||||||||| || ||||||
Sbjct: 386 ctcttgcctgaaccccccttctcctctacttctcctcctccaacttcaagcttatcacca 327

                                                                       
Query: 172 gacattgagcctgttttccctacaacgggagtggcagtgccttctccagctgaatcatca 231
           || ||||| || ||||||||||| || ||||  || || ||||||||||| || || || 
Sbjct: 326 gatattgaaccggttttccctactacaggagctgctgttccttctccagccgagtcttcg 267

                                                                  
Query: 232 ctacccactattccttcaagcccaagccctccaaatccagatgttattcatccag 286
           || ||||| |||||||| || || |||||||||||||||||| ||||| ||||||
Sbjct: 266 ctgcccaccattccttctagtcctagccctccaaatccagatattattaatccag 212