Jatropha Genome Database

JcCA0009731.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0009731.20 + phase: 0 
         (873 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002028 conserved hypothetical protein                          242   3e-63

>29647.m002028 conserved hypothetical protein
          Length = 942

 Score =  242 bits (122), Expect = 3e-63
 Identities = 239/278 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggaaacgtcacatcggtggtggtttgatagtcaccatagcttcaggcgctctccctggct 80
           |||||| |||||  ||||||||||||||  |||||||||||    ||||||||| |||||
Sbjct: 27  ggaaacttcacactggtggtggtttgattctcaccatagctcactgcgctctccatggct 86

                                                                       
Query: 81  acagtctactcttggcgagctagacgtgaagacgaaggcaatgttgaaactgatagagga 140
           ||| || ||||||| ||| ||||||   ||||| ||||||||| ||||| ||||||||||
Sbjct: 87  acaatccactcttgccgaactagacaataagacaaaggcaatgctgaaagtgatagagga 146

                                                                       
Query: 141 agatgcagattccttttcccaacgtgcagagctgttttacaagaaacgacctgagctaat 200
           |||||||||||||||| | |||||||||||| |||  || ||||||||||| ||| | ||
Sbjct: 147 agatgcagattcctttgctcaacgtgcagagatgtactataagaaacgaccagagttgat 206

                                                                       
Query: 201 tagcatggttgaagatttttacaggacatatcgctcgttagcagaacgatatgatcaact 260
           |||||||||||||||||||||||| ||  |||| ||  ||||||| ||||||||||||||
Sbjct: 207 tagcatggttgaagatttttacagaacccatcgttcactagcagagcgatatgatcaact 266

                                                 
Query: 261 gaagtctgactccgcaaatcgcctcctaacaacattgg 298
            ||||||||||| | |||||||||||||||||||||||
Sbjct: 267 taagtctgactctggaaatcgcctcctaacaacattgg 304



 Score = 93.7 bits (47), Expect = 2e-18
 Identities = 138/167 (82%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                       
Query: 685 ataagacagctcagtgtggctgtagatgtgcttaagctagagaatgtggagctaaggaag 744
           ||||||||||||||| | ||||| || ||  |||| ||||||||| || |||| ||||||
Sbjct: 760 ataagacagctcagtttagctgtggaagtaattaaactagagaatttgaagctgaggaag 819

                                                                       
Query: 745 agtgtggccagagactcccccaagaccaagagaaagagcctttttgagttcgagaaattg 804
            |||| |||||||| ||||||||||  ||| ||    || ||||||||||| | || |||
Sbjct: 820 tgtgtagccagagattcccccaaga--aaggga----gcttttttgagttcaacaagttg 873

                                                          
Query: 805 aaggatatatttgcagggaagcttttcaacggatcttcaaattctcg 851
           |||||  ||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 874 aaggaagtattttcagggaagcttttcaatggatctgcaaattctcg 920