Jatropha Genome Database

JcCA0009632.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0009632.20 - phase: 0 /pseudo/partial
         (735 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008910 homeobox protein knotted-1, putative                    426   e-119

>30128.m008910 homeobox protein knotted-1, putative
          Length = 984

 Score =  426 bits (215), Expect = e-119
 Identities = 341/383 (89%)
 Strand = Plus / Plus

                                                                       
Query: 286 gatgaagcagctggaacttctgaggaggagttaagctgtggtgagattgaagcatcagaa 345
           |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 529 gatgaagcagttggaacttcagaggaggagataagctgtggtgagattgaagcatcagaa 588

                                                                       
Query: 346 agtcaggaatcttctggtggccgtcctaatgatcaggatgttaaaggaatgctcatgcgc 405
           || |  ||||||| |||  |||| |||  ||| | |||| |||||||||||||  | || 
Sbjct: 589 agccgagaatcttgtggcagccggcctgttgacccggatcttaaaggaatgctattacgg 648

                                                                       
Query: 406 aagtacagtggttacctaagcaatttgagaaaggagtttctaaagaaaagaaagaaaggc 465
           |||||||||||||| || |||||| |||||||||||||  ||||||||||||||||||||
Sbjct: 649 aagtacagtggttatcttagcaatctgagaaaggagttcttaaagaaaagaaagaaaggc 708

                                                                       
Query: 466 aaactacctaaggatgctaggacgattcttttggattggtggaataatcattatcggtgg 525
           |||||||| |||||||| |||| ||||||||||||||||||||||||||||||  | |||
Sbjct: 709 aaactaccaaaggatgcaaggatgattcttttggattggtggaataatcattacagatgg 768

                                                                       
Query: 526 ccatatcctacggaagatgagaaggtgaagttatcagagataacaggactagatcaaaag 585
           ||||||||||||||||| ||||| ||||||||||||||||| || ||| |||||||||||
Sbjct: 769 ccatatcctacggaagacgagaaagtgaagttatcagagatcactggattagatcaaaag 828

                                                                       
Query: 586 caaatcaacaactggttcatcaaccagcggaagaggcattggaaaccatctgaagatatg 645
           ||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||| ||
Sbjct: 829 caaataaacaactggtttatcaaccagcggaagcggcattggaagccatctgaagatgtg 888

                                  
Query: 646 agatttgctctcatggaaggtgt 668
           |||| |||||| |||||||||||
Sbjct: 889 agatatgctcttatggaaggtgt 911



 Score =  178 bits (90), Expect = 3e-44
 Identities = 133/146 (91%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 41  ggaatcatactgtgagatactccatagatacaaagaggagctgtccaagccgttcaatga 100
           |||||| ||||||||| |||||||||||||||| |||||||| |||||||||||  ||||
Sbjct: 384 ggaatcgtactgtgaggtactccatagatacaaggaggagctatccaagccgtttgatga 443

                                                                       
Query: 101 ggcgactacattcttgagcagcatagaatcacaactgagtaatctttgtaaaggaacgct 160
           ||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 ggcgactacattcttcagcgacatagaatcacaactaagtaatctttgtaaaggaacgct 503

                                     
Query: 161 gac-aaaccctttgattatggctctg 185
           ||| ||| ||||| ||||||||||||
Sbjct: 504 gacaaaaacctttcattatggctctg 529