Jatropha Genome Database

JcCA0006671.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0006671.40 - phase: 0 
         (621 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003622 conserved hypothetical protein                          105   3e-22

>30146.m003622 conserved hypothetical protein
          Length = 648

 Score =  105 bits (53), Expect = 3e-22
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 433 tcgtcttacgtggatactgagctggagttcagtggggttagaatcctgtctgatgtggtg 492
           |||||||| |||||| ||||||||||||| ||||||||  || |  ||||||||||||||
Sbjct: 427 tcgtcttatgtggatgctgagctggagtttagtggggtaggagtgttgtctgatgtggtg 486

                                                            
Query: 493 ttcttgcttgaggacttagctaagggtagggtgccctttgatactgtta 541
           |||||||| |||||||| || | ||||| |||||| |||||||||||||
Sbjct: 487 ttcttgctcgaggacttggccaggggtaaggtgccgtttgatactgtta 535



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 194 tctaccttctctggccgtcggatcctaatctgagaatcgtacggctaagccttaacaaaa 253
           |||||||  |||||||||| ||||||| ||| |  ||||||||  || || | |||||| 
Sbjct: 191 tctacctcttctggccgtccgatcctactctcaagatcgtacgcttacgcttgaacaaac 250

                                                   
Query: 254 tacatatccacactttacccataatcaacattgatgtatc 293
           |||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 251 tacacatccacactttgcccataatcaacattgacgtatc 290