Jatropha Genome Database
- JcCA0006582.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0006582.10 + phase: 0 /partial
(1779 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29738.m000999 RNA binding protein, putative 615 e-175
>29738.m000999 RNA binding protein, putative
Length = 5235
Score = 615 bits (310), Expect = e-175
Identities = 1126/1398 (80%), Gaps = 15/1398 (1%)
Strand = Plus / Plus
Query: 379 tgtgaaaaagttctggaggctgttgcttctgttgtcagtacattcaatgtgccactagag 438
||||| |||||||||| ||||| | |||| ||||||||||| | |||||||||| |||
Sbjct: 1780 tgtgagaaagttctgggggctgctacttcagttgtcagtactgttgatgtgccacttgag 1839
Query: 439 gttctcttgcactttgtttcaacattgccacgggagtttactgattatgggggttcgtta 498
|||||| |||| || || ||||| |||||||| || |||||||||||||||||| | |||
Sbjct: 1840 gttctcctgcatttcgtctcaaccttgccacgagaatttactgattatgggggtccctta 1899
Query: 499 agagaaaaaatgcaagaatggctttttgggggtgataagttttacagttctaataacaat 558
|||| |||||||||||||||||||| |||| ||||||| ||| |||
Sbjct: 1900 agagtgaaaatgcaagaatggcttttgggggttgataagaa--acatttc---------- 1947
Query: 559 agtaatcagattaagcttctgaaaagccttcaggaattcccagaaaggtttaccagctcc 618
||| | ||||| ||||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct: 1948 agttctgagattcagcttctgaaaagtcttcaggaattcccggaaaggtttacaagttct 2007
Query: 619 caagtttttgtcgacacttttgttagttttgatgacgaagacttggatgcatgggaatct 678
||| | | || || ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 2008 caacatgtggttgatgcttttgttagttttgatgatgaagacttggatgcatgggattct 2067
Query: 679 gaagcaaaaagatgggcaagaatgctatttcttgtaatcaagggggaagatcaattaggg 738
|||| |||||||||||||| |||| |||||||||||||||| |||| | || | |
Sbjct: 2068 gaagtgaaaagatgggcaagggtgctttttcttgtaatcaaggaggaaaaccatctcgta 2127
Query: 739 cctatattcacgtttattcgcaagtatggggttaacatctgtgaagaattcaatcgtgtt 798
|||||||||| |||| ||||||| | ||| ||| ||||||| || ||| ||| | || |
Sbjct: 2128 cctatattcaagtttcttcgcaattgtggagttgacatctgcaaacaatgcaagcatgct 2187
Query: 799 ggttgttcacctgtgaaattttttgtcattaccattaatctggttgcagagattcaacta 858
|| || |||||||| || ||| ||||| |||| | || ||| |||||||||||| | ||
Sbjct: 2188 gggtggtcacctgtaaagtttcttgtccttactgtgaacctgattgcagagattcgaata 2247
Query: 859 atgcaggagaaagcacttgacaatggtatcagaattagaaataaacccaaagttagtttg 918
|| ||||| || | |||| |||| ||| ||||||| ||| | || ||| |||
Sbjct: 2248 ttgtgggagagagaagttgaacgtggtttcaaaattagatctaattcagaaaatagcttg 2307
Query: 919 tttgagacagtggatcaattggattgtgcagaagcttctataatcaatggaaaattgtct 978
|| ||| | ||||| |||| || || |||||||||| ||| |||| |||||| |||
Sbjct: 2308 cttaggactatagatcagttgggttctgaagaagcttctgcaattaatgaaaaattttct 2367
Query: 979 gatatttttctgtcaatactggacgatctggtcaattttgcttgtgcatcttgttccatt 1038
||| |||||||||| |||||||| || |||||| ||||||| || | |||||||| ||
Sbjct: 2368 gatctttttctgtctatactggaggagctggtctcttttgctagtacgtcttgttctata 2427
Query: 1039 ttcttaactagcactgccagggacacaagtcttcccagttctgtgagaggaaaacttgga 1098
|||| ||||| || | ||||||| |||||| ||||| ||||||||||||||||||
Sbjct: 2428 ttctggactagttttgtgaaggacacagatcttcctagttcagtgagaggaaaacttgga 2487
Query: 1099 ggtccaagtcaacgtcggctttcatcttcaaccacaactgctgtgttggaagctataaca 1158
|| || |||||| | ||| | |||||||| || | |||||||||||||||||| ||
Sbjct: 2488 ggccctagtcaaagacggttgtcatcttctactgctactgctgtgttggaagctgtatgt 2547
Query: 1159 tcaatccgagcagttgcatctatcatgtcatggtgtgcacagtttaccagtgatgttcat 1218
|| | | ||||||||||| ||| || |||||| ||| |||| | |||||||||
Sbjct: 2548 tctcttccttcagttgcatctgtcacatcctggtgttcactttttaaaaatgatgttcag 2607
Query: 1219 ctcaagtttgcttggacttttatgtggcaattcttttggaagactgtttcatctccgact 1278
||||||||||||||| ||||||||||| ||||||||| |||||| |||||||| ||
Sbjct: 2608 ctcaagtttgcttggtcttttatgtggaaattctttttgaagaccaattcatctctaaca 2667
Query: 1279 tgtggttctgagaatggagcagaaatttgtctagcagcatatgaagcattagttccggtt 1338
| || | |||||| |||||||||| ||||||| ||||||||||||||||||| ||| ||
Sbjct: 2668 tatgatactgagagtggagcagaagtttgtcttgcagcatatgaagcattagctccagta 2727
Query: 1339 ctcagatctatagcctctacattctctccacgagctatggatcttattatggaaaatgac 1398
|| ||| | ||| | ||||||||||||| ||| |||||||||||| || | |||
Sbjct: 2728 ctgagagcattagttttcacattctctccactcgctttggatcttattagagatagtgat 2787
Query: 1399 aaatcatcaacatctgcagaaggcag---ttgcttagatcagttggttctgtctttcctt 1455
||||||||| |||||||||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 2788 aaatcatcatcatctgcagaagaaaaggcttggttagatcagttggttctttctttcctt 2847
Query: 1456 caaaatataaataatcttcttgctgttggagtattggtgcgaacccgaagagcggtgtta 1515
|| ||||| ||||| ||||| || |||||||| |||||||| | ||||| ||||| ||
Sbjct: 2848 cagaatatcaataaccttctagcagttggagttctggtgcgatcacgaagggcggttttg 2907
Query: 1516 ctgaattggaagtggctatgcctagaatctctgctatccattcctcaaactgctgttgag 1575
||||| ||||||||||| ||||||||||||||||| || |||||||| |||| |||||
Sbjct: 2908 ctgaactggaagtggctttgcctagaatctctgctgtcaattcctcactatgcttttgag 2967
Query: 1576 aatgggattcatttagaggataatagatcattcttctcagatgcagtaatcagatacatt 1635
|||||| |||||||| ||| || |||| |||||||||||| |||| |||||||| |||
Sbjct: 2968 aatgggcctcatttagtggacaacagattattcttctcagaagcagcaatcagattaatt 3027
Query: 1636 tttagtgatcttgttgaaagccttgagaattctggagaaagttctgttttgccaatgctg 1695
||||||||||||||||| || ||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 3028 tttagtgatcttgttgagagtcttgagaatgctggggaaggttctgttttgccaatgctg 3087
Query: 1696 agatccatcagattgaccttggggctcttgtcctctgaaagttcaggttcacttgtttca 1755
||||| ||||| |||||||| ||||| ||| |||||| || ||||||||||||||||||
Sbjct: 3088 agatctatcaggttgacctttgggcttttggcctctggaaattcaggttcacttgtttcc 3147
Query: 1756 tcatgcaatgatgtggat 1773
|||||||| | |||||||
Sbjct: 3148 tcatgcaacggtgtggat 3165
Score = 188 bits (95), Expect = 8e-47
Identities = 265/321 (82%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 57 tctatatcaatatacaagacatctaaatgtgaggaaaggaattgactttttgcatagttt 116
||||| ||||||||||||| | || |||| ||||||| ||||| |||||||||||||||
Sbjct: 1419 tctatgtcaatatacaagatacctgaatgcaaggaaagaaattgtctttttgcatagttt 1478
Query: 117 agcattgattgctaaacatcagtcttttggtagagctggattaatgggtcttgctgaatg 176
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 agcatcagttgctaaacatcaatcttttggtagagctggattaatgggtcttgctgaatg 1538
Query: 177 tattgcttcagctgcttccggagtaggaatacaggatgataatgaagttgaatggagcga 236
||||||||||||||||| || |||||| | | |||| ||||||| |||||||| |
Sbjct: 1539 tattgcttcagctgcttgtggggtaggattgcgtgatggaaatgaagctgaatggactaa 1598
Query: 237 agatgcttctcctaatgcagttcagttgaaatcttcttcaaacaaaattcaccacctcga 296
|||||||| | ||| || | || | ||||||||||| || || || | |
Sbjct: 1599 agatgctttgtgtgatgaggtctggctggattcttcttcaaaaaaggtt---catattaa 1655
Query: 297 caaaacagacttattggatactttgagatttgtcattgagagcagcaaacaacatttcaa 356
|||||||||||| |||||| |||||||| |||||| || ||||||||||||||||||||
Sbjct: 1656 caaaacagacttgttggatgttttgagatatgtcatcgaaagcagcaaacaacatttcaa 1715
Query: 357 ccctaattatcgtcttcgagt 377
|||||| |||||| |||||||
Sbjct: 1716 ccctaaatatcgttttcgagt 1736
Score = 54.0 bits (27), Expect = 3e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 2 ttcttggtccatttattgaaggattaaatgaccctgtccaccacaaa 48
|||||||| ||||| |||||||||||||||| || || |||||||||
Sbjct: 1316 ttcttggttcatttgttgaaggattaaatgatcccgtgcaccacaaa 1362