Jatropha Genome Database
- JcCA0004811.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0004811.10 + phase: 2 /partial
(2731 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29993.m001063 ATP-dependent RNA helicase, putative 1411 0.0
>29993.m001063 ATP-dependent RNA helicase, putative
Length = 3690
Score = 1411 bits (712), Expect = 0.0
Identities = 1565/1848 (84%), Gaps = 6/1848 (0%)
Strand = Plus / Plus
Query: 203 gtcaaaactttctacttggaggatgtactttctatcattaaatctccagatgacaatcat 262
||||||| |||||||||||| ||||||||||| ||| | || ||| ||||| | ||||||
Sbjct: 1123 gtcaaaaatttctacttggaagatgtactttcaatcctaaattctgcagataataatcat 1182
Query: 263 attgattctgctatgccaggcgtcccaaataaaagccctgagctaacagaggaagacaaa 322
|||||||||||||||||| | |||||| |||||||| |||||||| ||| ||||||| |
Sbjct: 1183 attgattctgctatgccaagtatcccaattaaaagccatgagctaagagaagaagacaga 1242
Query: 323 gctgctttagatgaagctatcaatttggcttggacaaatgatgaatttgatcccctattg 382
|||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 1243 gctgctgtagatgaagctatcaatttagcttggacaaatgatgaatttgatacccttttg 1302
Query: 383 gatttggtttcttctgaaacgaaccctaatgtttataattacctagattccttacttgga 442
|||||||||||||||||| | ||| | ||||| |||| || ||| || | |||
Sbjct: 1303 gatttggtttcttctgaaggaatcccagaggtttacaatttccaagagtcatcgactggc 1362
Query: 443 ttgactccattgatggtctttgctggaaagggtagagtggttgatgtttgcatgcttctg 502
| | ||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1363 ctatcgccattaatggtctttgctggaaagggtagagtagatgatgtttgcatgcttctc 1422
Query: 503 tcttttggtgtgaattgtcatttacaggacaaggatgggctaacggcaatggactgggca 562
|| ||| || | ||||||||||| ||||||||||| || || ||| | || |||||
Sbjct: 1423 tcgtttaatgcagactgtcatttacaagacaaggatggactgacagcactagaatgggcc 1482
Query: 563 aaacaagaaaaccagcaagaaactgctgaagtaataaaaagacatgttgaaagtgccttg 622
||| |||||||||||| ||||||||||||||| ||||||||||||||||| | |
Sbjct: 1483 aaaagagaaaaccagcatgaaactgctgaagtattaaaaagacatgttgaagtttctcca 1542
Query: 623 accgactccctcaagcagcaacaactacttgataaatatctggaaaaaattaaccctgaa 682
|| |||| || ||||||||||| |||||||||| ||||| | ||||||||||||||||
Sbjct: 1543 actgactgccgggagcagcaacaattacttgataattatctaggaaaaattaaccctgaa 1602
Query: 683 ctcattgatgttgttcttatagaacagttgttaaggaaaatatgcattgattcgaaagat 742
|| |||||||| ||||||||| | ||||||||||||||| || ||| ||| | ||||
Sbjct: 1603 cttgttgatgtttctcttatagagcggttgttaaggaaaatttgtatttcttcaagagat 1662
Query: 743 ggtgctatcctcattttccttcccggatgggatggtataaataagactagggagaggtta 802
|||||||||||| |||||||||| || ||||||| ||||| | ||| |||| | |||
Sbjct: 1663 ggtgctatcctcgttttccttcctgggtgggatgatataaggaggacccgggaaggatta 1722
Query: 803 ctagcaaatccatttttcaaagactcttctaagtttgttataatttctctccattctatg 862
|| |||||||||||||||||||| ||||||||||| | ||||| ||||| |||||||||
Sbjct: 1723 cttgcaaatccatttttcaaagattcttctaagttcttgataatctctcttcattctatg 1782
Query: 863 gtcccaaccatggagcaaaagaaagttttcaagcgcccacctcagggttgccggaaaatc 922
|| || | ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1783 gttccgtctatggagcaaaagaaagttttcaaacgcccacctcaaggttgccgcaaaatt 1842
Query: 923 attctttcaactaatattgcggaaagtgcaattaccattgatgatgttgtctatgtcata 982
||||||||||||||||| || |||| | | ||||||||||| |||||| ||||||| ||
Sbjct: 1843 attctttcaactaatatcgctgaaacttccattaccattgacgatgttatctatgtaatt 1902
Query: 983 gatagtggtcgaatgaaagaaaaaagttatgatccttatcagaatgtatcaactcttcat 1042
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct: 1903 gatagtggtcgaatgaaagaaaaaagttatgacccttataacaatgtatcaactcttcaa 1962
Query: 1043 tctaactgggtgtcgaaagcaagtgcaaggcagcgcgaaggacgtgcaggccgctgtcag 1102
||| |||||| || ||||||||| ||| |||||| || |||||||| || |||||||||
Sbjct: 1963 tcttcctgggtatccaaagcaagttcaaagcagcgtgagggacgtgctggtcgctgtcag 2022
Query: 1103 cctgggatatgctatcatctttattcaaaactccgagcagcttctttgccagatttccaa 1162
|||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 2023 cctgggatgtgttatcatctttattcaaaacttcgagcagcttctatgccagatttccaa 2082
Query: 1163 gttcctgaaattaagagaatgccaattgaggaactttgtttgcaagtgaagttacttgat 1222
||||||||||| | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 2083 gttcctgaaatcaggagaatgccaattgaagaactttgtttgcaggtgaagttgcttgat 2142
Query: 1223 cccaattacaagatagaagatttcttgcggaagactctggaccctccagttccagagacc 1282
||||||| |||||||||||| ||| | |||||| || |||||||| ||||| || |||
Sbjct: 2143 cccaattgcaagatagaagaattcctagggaagatgcttgaccctcctgttcctgaaacc 2202
Query: 1283 attcataatgcaattactgttcttcaggatattggagctttatcattagacgaacaactg 1342
|| | ||||| ||| |||||||||||||||||| ||| |||| || |||||| ||
Sbjct: 2203 atacggaatgctattcttgttcttcaggatattggggctctatcgccggatgaacaattg 2262
Query: 1343 acagaactaggagagaagctaggctgcctacctgttcatccattgacaagcaagatgctt 1402
|||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 2263 acagaagtaggagagaagctgggctgcctgcctgttcatccattgataagcaagatgctt 2322
Query: 1403 ttctttgcaatattgatgaattgccttgatccagctttgacattggcatgtgcctctgac 1462
|||||||| ||||||||||||||||| || |||||||||||| |||| ||||||||||||
Sbjct: 2323 ttctttgctatattgatgaattgcctagacccagctttgacaatggcttgtgcctctgac 2382
Query: 1463 tatagagatccatttacccttcctgtgttgccaaatgaaaagaagagagctattgcagct 1522
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 2383 tatagagatccatttacccttcctgttttgccaaatgaaaagaagagagctgctgctact 2442
Query: 1523 aaatttgagattgcttcactgtatggtggctacagtgatcaactagcagttatagcagcc 1582
||||||||| | || |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 2443 aaatttgagctagcgtcactgtatggtgggcgcagtgatcagctagcagttatagcagcc 2502
Query: 1583 tttgagtgttggaaaaatgctaaagcaaggggtcaagaactgcagttttgttctcaatac 1642
| |||||| ||||| |||||||||| ||| ||||||||| | ||||||||||||||||
Sbjct: 2503 tatgagtgctggaagaatgctaaagaaagaggtcaagaagcacggttttgttctcaatac 2562
Query: 1643 tttatatctcctggtatcatgaatatgctggatggtatgcgtaaacagcttcaggcagaa 1702
||||| ||| | | | ||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct: 2563 tttatctcttcaagcaccatgattatgctgcatggtatgcgtaagcagcttctatcagaa 2622
Query: 1703 ctaatccgtaatgggttcattgaggatggtgtctcatgttgtaatctgaatgcgcatgac 1762
||||| || ||||| |||||| |||| | || ||||||||||||| ||||| | |||||
Sbjct: 2623 ctaattcggaatggattcattcaggaagatgcctcatgttgtaatgtgaattcacatgat 2682
Query: 1763 caaggaatactccattctgtccttgttgctggtttgtatcctatggtagggagattcctt 1822
| ||||||||| || |||| |||||||||||||||||||||||||| |||||| |||||
Sbjct: 2683 ccgggaatactctatgctgtacttgttgctggtttgtatcctatggtggggagagtcctt 2742
Query: 1823 ccgcccaaaaatgggaaacgtttccacatagaaactgcagttggtggtgctaaagtcagg 1882
|| || | |||||| |||||||| |||| |||||| |||||| ||||| |||
Sbjct: 2743 ccacctagaaatggaaaacgttttattgtagagactgca---actggtgccaaagttagg 2799
Query: 1883 ttgcatcctcattctcttaattataataaattaacatttaaaaaagctgatgactgccct 1942
||||||||||| || ||||||| ||| || || ||| ||| ||||||||||| ||
Sbjct: 2800 ttgcatcctcaatcccttaattttaagctgtt---atctaacaaaactgatgactgctct 2856
Query: 1943 ttgattgtgtatgatgagataactcgaggggatgggggcatgcacataaggaactgtact 2002
|||||| | | |||||| ||||| || || || |||| ||| |||||||||||||||||
Sbjct: 2857 ttgattatttttgatgaaataacccgcggagaatggggtatgaacataaggaactgtact 2916
Query: 2003 attgttgggccacttccattgttactgcttgcaacagagattgtagtt 2050
|||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct: 2917 attgttggcccacttgcattactactgcttgcaacagagattgtagtt 2964
Score = 170 bits (86), Expect = 3e-41
Identities = 116/126 (92%)
Strand = Plus / Plus
Query: 1 agacatccttccttcacatcctcatcttcggctgatattgatgagtgctactcttgatgc 60
|||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct: 999 agacatacttccttcatatcctcaccttcgactgatattgatgagtgctactcttgattc 1058
Query: 61 tgcacgattttcccaatattttggtggctgcccaattattcgtgttcctgggttcactta 120
|| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 1059 tgaacgattttcacaatattttggtggctgcccaattgtccgtgttcctgggttcacata 1118
Query: 121 tcctgt 126
||||||
Sbjct: 1119 tcctgt 1124
Score = 153 bits (77), Expect = 7e-36
Identities = 248/305 (81%)
Strand = Plus / Plus
Query: 2161 gggtggacacaatgacaagaagatcatgtcatctcctgataattcagttacaacagttgt 2220
||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 3081 gggtggacacaatgatgagaagataatgtcatctcctgataattcggttaatgtagttgt 3140
Query: 2221 tgatcggtggctttatttcagatcaacagcccttgatgttgctcagatttattgcttgag 2280
||||| ||||||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct: 3141 ggatcgatggctttatttttcatcaacagcccttgaagttgctcagatttactgtttgag 3200
Query: 2281 agaacgattatcagcagcaatcttattcaaagtgacccatccaaggaaaacacttcctcc 2340
||| |||||||||||||| || ||||||| ||| | ||||| | | | ||||||||
Sbjct: 3201 agagcgattatcagcagctattttattcagagtaatgcatcctaagcaggagcttcctcc 3260
Query: 2341 agctctagaggcttcaatgtatgcaattgcttctgttctgtcttatgatgggctatctgg 2400
|| || | ||| || ||| || | |||| |||||||||||||||||| | ||| ||
Sbjct: 3261 tgcccttgcggcctcgatgcgagcgacagcttgtgttctgtcttatgatggacaatccgg 3320
Query: 2401 aatcccattacctttggaatctgtagactcgttgacatcaatggtctatgcaactggaat 2460
||| |||||||| |||||||| ||||| ||| ||||||||||| ||||||||| ||
Sbjct: 3321 gatctcattacctcaagaatctgtggactctttggcatcaatggtcgatgcaactgagat 3380
Query: 2461 tgaca 2465
|||||
Sbjct: 3381 tgaca 3385