Jatropha Genome Database
- JcCA0003732.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0003732.20 + phase: 0
(822 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30190.m011168 Transcription initiation factor IIE subunit beta, ... 392 e-108
>30190.m011168 Transcription initiation factor IIE subunit beta,
putative
Length = 849
Score = 392 bits (198), Expect = e-108
Identities = 471/562 (83%)
Strand = Plus / Plus
Query: 244 gcttttacaccagaacaaataaatgacgcttgttttgttgatgtcaagtccaataaaact 303
|||||||||||||| ||||||||||| || || | |||||||||||| ||||| ||| ||
Sbjct: 271 gcttttacaccagagcaaataaatgaagcctgctatgttgatgtcaactccaacaaagct 330
Query: 304 gtctttgacagtttgaggaacaacccaaaagttaattatgatgggaggtgcttctcctac 363
|||||||| ||||||||||| || || ||||| | |||||||||||| ||| || |||
Sbjct: 331 gtctttgatagtttgaggaataatccgaaagtgcactatgatgggaggcacttttcttac 390
Query: 364 aagtcaaagcatgatttgaaggacaagaaccaattactctccttgatatgcaagtttcca 423
||||| |||||||||||||||||||| || ||| |||| | ||||||| | | ||| |
Sbjct: 391 aagtccaagcatgatttgaaggacaaaaagcaactactttacttgataagagaatttaaa 450
Query: 424 gaaggcattgccactattgatctcaaggatgcatacccagctgtgacggaggatttacag 483
||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 451 gaaggcattgctgttattgatctcaaggatgcatacccaactgtgatggaggatttacag 510
Query: 484 gcgttgaaagctgctggcaagatttggctgctatcgaactatgattcacaggaggacatt 543
|| |||||||||||||| |||||| |||| || || | |||||| || ||||| |||
Sbjct: 511 gctttgaaagctgctggtggtatttggttgctgtcaaattttgattcgcaagaggatatt 570
Query: 544 gcatatccaaacgaccccagggcaaatattaaggtggatgatgagcttaagcagcttttt 603
|| |||||||| ||||||| ||| |||||||||||||||||| |||||| | |||
Sbjct: 571 gcctatccaaatgaccccaaggctgttattaaggtggatgatgaacttaaggtgaagttt 630
Query: 604 cggggggttgaattggctcatgatatgctcgatattgagagggatctaataaagaatggc 663
|||| | |||||||| | | |||||||| || ||||||| ||||||| |||||||||
Sbjct: 631 cgggagattgaattgccacgcgatatgcttgacattgagaaggatctacagaagaatggc 690
Query: 664 atgaagcccgctacagacaccgcgaagaggagggctgctgcccaggtgcagggcatttcc 723
|||||||| |||||| |||| || ||||| |||||||| ||||| |||||||||||||||
Sbjct: 691 atgaagcctgctacaaacacggcaaagagaagggctgcagcccaagtgcagggcatttcc 750
Query: 724 tccaagccaaagaacaagaagaagaagcatgagatcagcaagaggactaagctaacaaat 783
|||||||||||| ||||||||||| | | || |||||||||| ||||||||| ||||||
Sbjct: 751 accaagccaaagaccaagaagaagacgaaagaaatcagcaagaagactaagctgacaaat 810
Query: 784 gctcatcttcctgaactttttc 805
|| |||||||| || |||||||
Sbjct: 811 gcacatcttccagagctttttc 832
Score = 73.8 bits (37), Expect = 1e-12
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 155 ctgtcaaattttcaaatgacacagagagactccaacacatcaacagtattcgaaaagctc 214
|||| |||||||||||||| ||||||||||| |||||||| | ||||| |||||||| |
Sbjct: 158 ctgttaaattttcaaatgatacagagagacttcaacacattcatagtatccgaaaagccc 217
Query: 215 ctgttggagctcagatgaagc 235
|||| || |||||||| ||||
Sbjct: 218 ctgtcggtgctcagatcaagc 238