Jatropha Genome Database
- JcCA0003212.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0003212.20 - phase: 0
(456 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30174.m008862 40S ribosomal protein S13, putative 555 e-158
30147.m014187 40S ribosomal protein S13, putative 232 1e-60
29813.m001467 conserved hypothetical protein 115 2e-25
30190.m011019 40S ribosomal protein S13, putative 90 1e-17
>30174.m008862 40S ribosomal protein S13, putative
Length = 456
Score = 555 bits (280), Expect = e-158
Identities = 412/456 (90%)
Strand = Plus / Plus
Query: 1 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 60
||||| |||||||||||| ||||||||||||| || || || |||||||| || |||||
Sbjct: 1 atgggacgcatgcacagtagaggtaagggtatatcggcatctgctttgccctacaagaga 60
Query: 61 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 120
|| ||||| |||||||| ||||| ||| |||||||||| || || ||||| ||||| |||
Sbjct: 61 acgccgcctagttggcttaagatttcttctcaggatgttgatgagaacatttgcaagttt 120
Query: 121 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 180
|| |||||||| |||| || |||||||||||||| |||||||||||||||||||| |||
Sbjct: 121 gcgaagaaaggtttgagaccgtctcaaattggtgttatccttcgtgattctcatgggatt 180
Query: 181 gcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatgggctt 240
|| ||||||| |||||||||||| | |||||||||||| ||| ||||||| || || |||
Sbjct: 181 gctcaagtgaagagtgttactggcagcaagattttgcgtatactgaaggctcacggactt 240
Query: 241 gctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccattaggaaa 300
|||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 gctcctgagatcccagaagatttgtaccacctcatcaagaaagcagttgcaattaggaag 300
Query: 301 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 360
Query: 361 aggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaa 420
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggatccatcgcttagcacgctattacaagaagacaaagaagcttccaccagtatggaaa 420
Query: 421 tatgaatcaactactgccagcacccttgtggcatag 456
|||||||||||||| |||||||||||||||||||||
Sbjct: 421 tatgaatcaactacagccagcacccttgtggcatag 456
>30147.m014187 40S ribosomal protein S13, putative
Length = 339
Score = 232 bits (117), Expect = 1e-60
Identities = 240/281 (85%)
Strand = Plus / Plus
Query: 1 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 60
|||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 1 atgggtcgtatgcacagtcgcggtaagggtatctcggcttcagctttgccttacaagaga 60
Query: 61 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 120
||||| || |||||||| ||||| ||| |||||||||| ||||| ||||| |||||||||
Sbjct: 61 acaccaccaagttggctcaagatctcttctcaggatgttgaggagaacatttgcaaattt 120
Query: 121 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 180
|||||||| || | ||||| ||||| |||||||| || || ||||||||||| ||||||
Sbjct: 121 gcaaagaaggggcttactccttctcagattggtgtaattctccgtgattctcacggtatt 180
Query: 181 gcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatgggctt 240
|| ||||| |||||||||||||||| ||| || ||||| || | ||||| ||||| |||
Sbjct: 181 gctcaagttaggagtgttactggtagcaaaatcttgcgtatcctcaaggctcatggtctt 240
Query: 241 gctcctgaaatacctgaagatttgtaccacctcatcaagaa 281
|| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 241 gcgcctgaaattcctgaggatttgtaccatcttatcaagaa 281
>29813.m001467 conserved hypothetical protein
Length = 309
Score = 115 bits (58), Expect = 2e-25
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 124 aagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtattgcc 183
|||||||| ||||| || ||| ||||||||| |||||||||||||||||||| |||||
Sbjct: 169 aagaaaggtttgacaccctctacaattggtgttatccttcgtgattctcatgggattgct 228
Query: 184 caagtgaggagtgttactggtaacaagattttgcggatattgaaggcaca 233
||||||| |||||||||| | | |||||||||||| ||||||||||||||
Sbjct: 229 caagtgaagagtgttacttgcagcaagattttgcgtatattgaaggcaca 278
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 7 cgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagaggacaccg 66
|||||||||||| ||||||||||||| || || || |||||||| || ||||| || |||
Sbjct: 78 cgcatgcacagtagaggtaagggtatatcggcatctgctttgccctacaagagaacgccg 137
Query: 67 cc 68
||
Sbjct: 138 cc 139
>30190.m011019 40S ribosomal protein S13, putative
Length = 249
Score = 89.7 bits (45), Expect = 1e-17
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 1 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 60
|||||||| ||||||||||| |||||||||||||| ||||| || | || || || |
Sbjct: 1 atgggtcgaatgcacagtcgcggtaagggtatttccgcttctgcccttccctacaaacgc 60
Query: 61 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 120
|| || || || ||||| || || || |||| || || ||||| ||||||||||| |||
Sbjct: 61 actcctccaagctggctaaaaatctcctctcaagacgtagaggagaacatctgcaagttt 120
Query: 121 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 180
||||||||||| | || || |||||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 121 gcaaagaaagggctaacaccgtctcaaattggtgttatcctccgtgactctcacggtatt 180
Query: 181 gccca 185
|||||
Sbjct: 181 gccca 185