Jatropha Genome Database
- JcCA0002951.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0002951.10 + phase: 0
(750 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30146.m003455 RNA polymerase II mediator complex subunit, putative 718 0.0
>30146.m003455 RNA polymerase II mediator complex subunit, putative
Length = 756
Score = 718 bits (362), Expect = 0.0
Identities = 646/741 (87%), Gaps = 6/741 (0%)
Strand = Plus / Plus
Query: 12 gccgccgggagcaagcttcgagggaaatcctccggctccg------ccgcagccgccagg 65
|||||||||||||| |||||| |||||||||| ||| ||| ||||||||||| ||
Sbjct: 12 gccgccgggagcaaacttcgacggaaatcctctggcgccggcgccaccgcagccgccggg 71
Query: 66 aactgacatgactggaatatgcttcagagaccagttatggctgaacacttatcctctcga 125
|| |||||||| ||||||||||||||||||||| ||||||| ||||| || || |||||
Sbjct: 72 gacagacatgacaggaatatgcttcagagaccagctatggctaaacacatacccactcga 131
Query: 126 tagaaacctaatatttgattactttgccttgtcccctttctatgactggacttgcaataa 185
||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 132 ccgaaacctaatattcgattacttcgctctgtcccctttctatgattggacttgcaataa 191
Query: 186 tgagcagctgcgattgcaatccattcaccctctcgatctctcccacctctcgaaaatgac 245
||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 192 tgagcagcttcgattgcaatctattcaccctctcgatctctctcatctctcgaaaatgac 251
Query: 246 gggcatggaatacatgctgagtgaagtaatggagcccaatctttttgtcattcgtaagca 305
||||| || |||||||||| |||||| || ||||||||| | ||||| |||||||||||
Sbjct: 252 gggcacagagtacatgctgaatgaagtgattgagcccaatttgtttgttattcgtaagca 311
Query: 306 gaagagagatagtcctgagaaggtcacacctatgcttacttactatatattggatggatc 365
|||||| |||||||||||||| |||||||| ||||| || || ||| | |||||||||||
Sbjct: 312 gaagagggatagtcctgagaaagtcacaccaatgctgacatattatgttttggatggatc 371
Query: 366 aatataccaagcaccacagctttgcaatgtctttgcagctcgaattggacgggctttgta 425
|||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct: 372 aatatatcaagcaccacagctttgtaatgtctttgcagctcgaataggacgagctttata 431
Query: 426 ttatatatcaaaagcctttactaatgctgcctcaaagttggaaaagattggatatgttga 485
| |||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 432 tcatatatcaaaggcttttactactgctgcctcaaagctggaaaagattggatatgttga 491
Query: 486 tgaaggtgaaggtgtaacttctgaatcaaaagttggtaaagagttgattgacttcaagga 545
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 tgaaggtgaaggtgtagcatctgaatcaaaagttggtaaagaggtgattgacttcaagga 551
Query: 546 agttaagcgaatagatagtattcttgcctccttacaacgcaagttaccgccagcccctcc 605
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||
Sbjct: 552 agttaagcgaatagatcatattcttgcctccatacaacgcaagttaccaccagccccccc 611
Query: 606 accacctccgtttccagaaggctatgttccggttccaagtacggacacagagaaaggtgc 665
||| || || ||||||||||||||||| || | ||| | || |||| |||||| |
Sbjct: 612 acctccaccatttccagaaggctatgtaccccctgcaactgtagaagcagaaaaaggttc 671
Query: 666 tgaaagtcagcagggaactgagtcacaacctcttgctgttgatccaatcattgatcaagg 725
||||| || || | | ||| | ||||||| | |||||||||||||||||||||||||
Sbjct: 672 tgaaactcgacaagcagtagagacgcaacctcctcctgttgatccaatcattgatcaagg 731
Query: 726 tcctgccaaaaggatgaaatt 746
|||||| ||||| ||||||||
Sbjct: 732 tcctgcgaaaagaatgaaatt 752