Jatropha Genome Database

JcCA0000051.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000051.40 - phase: 0 /partial
         (528 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004740 50S ribosomal protein L2, putative                      571   e-162
29346.m000114 conserved hypothetical protein                           52   3e-06

>29929.m004740 50S ribosomal protein L2, putative
          Length = 336

 Score =  571 bits (288), Expect = e-162
 Identities = 306/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13  atatcatcatctacacccagaaagccgtatgctttagaagaagcttgtacagtttgggaa 72

                                                                       
Query: 61  gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gagattttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 132

                                                                       
Query: 121 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgct 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 133 atacataacatagaaatcacatttggaaagggtggacaattagctagagctgcaagtgct 192

                                                                       
Query: 181 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctggggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 193 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctgaggag 252

                                                                       
Query: 241 gttcgtttaatatccaaaaactgctcagcaacagtcggacaagtaggcaatactggggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 253 gttcgtttaatatccaaaaactgctcagcaacagtcggacaagtaggaaatactggggtg 312

                       
Query: 301 aaccagaaaagt 312
           ||||||||||||
Sbjct: 313 aaccagaaaagt 324


>29346.m000114 conserved hypothetical protein
          Length = 180

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 111 aggcacggccatacataacatagaaatcacacttggaa 148
           |||||||| |||||||||||||| ||||||| ||||||
Sbjct: 114 aggcacggtcatacataacataggaatcacatttggaa 151