Jatropha Genome Database
- JcCA0000051.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000051.10 - phase: 0 /pseudo
(342 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29785.m000935 Photosystem Q(B) protein, putative 607 e-173
30209.m001512 Photosystem Q(B) protein, putative 444 e-124
29652.m000333 Photosystem Q(B) protein, putative 307 2e-83
34348.m000007 conserved hypothetical protein 252 1e-66
30185.m000925 Photosystem Q(B) protein, putative 204 2e-52
29930.m000626 conserved hypothetical protein 176 6e-44
29957.m001408 conserved hypothetical protein 98 4e-20
>29785.m000935 Photosystem Q(B) protein, putative
Length = 1062
Score = 607 bits (306), Expect = e-173
Identities = 333/342 (97%)
Strand = Plus / Minus
Query: 1 atgagcattacgttcatgcataacttccataccaaggttagcacggttaataatatcagc 60
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1011 atgagtattacgttcatgcataacttccataccaaggttagcacggttgataatatcagc 952
Query: 61 ccaggtattaattacacgaccttgactatcaactacggattggttgaaattgaaaccatt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 951 ccaggtattaattacacgaccttgactatcaactacagattggttgaaattgaaaccatt 892
Query: 121 taggttgaaagccatagtgctaatacctaaagcagtgaaccaaatacctactacaggcca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tgggttgaaagccatagtgctaatacctaaagcagtgaaccaaatacctactacaggcca 832
Query: 181 agcagctaagaagaaatgtaaagaacgagaattgttgaaactagcatattggaagatcaa 240
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 831 agcagctaggaagaagtgtaaagaacgagagttgttgaaactagcatattggaagatcaa 772
Query: 241 tcggccaaaataaccatgagcggctacgatattataagtttcttcctcttgaccgaatct 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcggccaaaataaccatgagcagctacgatattataagtttcttcctcttgaccgaatct 712
Query: 301 gtaaccttcattagcagattcattttctgtggtttccctgat 342
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ataaccttcattagcagattcattttctgtggtttccctgat 670
>30209.m001512 Photosystem Q(B) protein, putative
Length = 651
Score = 444 bits (224), Expect = e-124
Identities = 284/304 (93%)
Strand = Plus / Minus
Query: 36 ggttagcacggttaataatatcagcccaggtattaattacacgaccttgactatcaacta 95
||||| ||| ||| ||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct: 562 ggttaacacagttgataatattagcccagatattaattacacgaccttgattatcaacta 503
Query: 96 cggattggttgaaattgaaaccatttaggttgaaagccatagtgctaatacctaaagcag 155
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 tagattggttgaaattgaaaccatttaagttgaaagccatagtgctaatacctaaagcag 443
Query: 156 tgaaccaaatacctactacaggccaagcagctaagaagaaatgtaaagaacgagaattgt 215
|||| | |||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 442 tgaatcgaatacctactacaggccaagcagctaggaagaagtgtaaagaacgagagttgt 383
Query: 216 tgaaactagcatattggaagatcaatcggccaaaataaccatgagcggctacgatattat 275
| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 382 taaaactagcatattggaagatcaatcggccaaaataaccataagcagctacaatattat 323
Query: 276 aagtttcttcctcttgaccgaatctgtaaccttcattagcagattcattttctgtggttt 335
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 322 aagtttcttcctcttgaccgaatctataacattcattagcagattcattttctgtggttt 263
Query: 336 ccct 339
||||
Sbjct: 262 ccct 259
>29652.m000333 Photosystem Q(B) protein, putative
Length = 945
Score = 307 bits (155), Expect = 2e-83
Identities = 170/175 (97%)
Strand = Plus / Minus
Query: 168 ctactacaggccaagcagctaagaagaaatgtaaagaacgagaattgttgaaactagcat 227
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 802 ctactacaggccaagcagctaggaagaagtgtaaagaacgagagttgttgaaactagcat 743
Query: 228 attggaagatcaatcggccaaaataaccatgagcggctacgatattataagtttcttcct 287
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 742 attggaagatcaatcggccaaaataaccatgagcagctacgatattataagtttcttcct 683
Query: 288 cttgaccgaatctgtaaccttcattagcagattcattttctgtggtttccctgat 342
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttgaccgaatctataaccttcattagcagattcattttctgtggtttccctgat 628
Score = 182 bits (92), Expect = 9e-46
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 1 atgagcattacgttcatgcataacttccataccaaggttagcacggttaataatatcagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 894 atgagcattacgttcatgcataacttccataccaaggttagcacggttgataatatcagc 835
Query: 61 ccaggtattaattacacgaccttgactatcaactac 96
||||||||||||||||||||||||||||||||||||
Sbjct: 834 ccaggtattaattacacgaccttgactatcaactac 799
>34348.m000007 conserved hypothetical protein
Length = 186
Score = 252 bits (127), Expect = 1e-66
Identities = 133/135 (98%)
Strand = Plus / Minus
Query: 1 atgagcattacgttcatgcataacttccataccaaggttagcacggttaataatatcagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135 atgagcattacgttcatgcataacttccataccaaggttagcacggttgataatatcagc 76
Query: 61 ccaggtattaattacacgaccttgactatcaactacggattggttgaaattgaaaccatt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 75 ccaggtattaattacacgaccttgactatcaactacagattggttgaaattgaaaccatt 16
Query: 121 taggttgaaagccat 135
|||||||||||||||
Sbjct: 15 taggttgaaagccat 1
>30185.m000925 Photosystem Q(B) protein, putative
Length = 792
Score = 204 bits (103), Expect = 2e-52
Identities = 119/123 (96%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 221 ctagcatattggaagatcaatcggccaaaa-taaccatgagcggctacgatattataagt 279
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 792 ctagcatattggaagatcaatcggccaaaaataaccatgagcagctacgatattataagt 733
Query: 280 ttcttcctcttgaccgaatctgtaaccttcattagcagattcattttctgtggtttccct 339
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 732 ttcttcctcttgaccgaatctataaccttcattagtagattcattttctgtggtttccct 673
Query: 340 gat 342
|||
Sbjct: 672 gat 670
>29930.m000626 conserved hypothetical protein
Length = 699
Score = 176 bits (89), Expect = 6e-44
Identities = 119/129 (92%)
Strand = Plus / Minus
Query: 172 tacaggccaagcagctaagaagaaatgtaaagaacgagaattgttgaaactagcatattg 231
|||||||||||||| || |||||| | |||||||||| | ||||| ||||||||||||||
Sbjct: 621 tacaggccaagcagttaggaagaagtataaagaacgaaagttgttaaaactagcatattg 562
Query: 232 gaagatcaatcggccaaaataaccatgagcggctacgatattataagtttcttcctcttg 291
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aaagatcaatcgaccaaaataaccatgagcagctacgatattataagtttcttcctcttg 502
Query: 292 accgaatct 300
|||||||||
Sbjct: 501 accgaatct 493
>29957.m001408 conserved hypothetical protein
Length = 390
Score = 97.6 bits (49), Expect = 4e-20
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 117 catttaggttgaaagccatagtgctaatacctaaagcagtgaaccaaatacct 169
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 373 catttaggttgaaagccatagtgcaaatacctaaagcagtgaaccaaatacct 321
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 304 accttcattagcagattcattttctgtggtttccct 339
||||||||||||||||||||||||||||||||||||
Sbjct: 324 accttcattagcagattcattttctgtggtttccct 289