Jatropha Genome Database
- JcCA0000041.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000041.30 + phase: 0
(1482 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28890.m000006 β-carboxyltransferase (β-CT) subunit of ... 1360 0.0
30185.m000928 conserved hypothetical protein 692 0.0
29917.m001954 conserved hypothetical protein 276 4e-73
29813.m001455 DNA-directed RNA polymerase beta chain, putative 127 2e-28
>28890.m000006 β-carboxyltransferase (β-CT) subunit of
Het-ACCase
Length = 822
Score = 1360 bits (686), Expect = 0.0
Identities = 775/807 (96%)
Strand = Plus / Plus
Query: 664 catttgtgggttcaatgcgaaaattgttatggattaaactataagaaatttttgaagtca 723
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 16 catttgtgggttcaatgcgaaaattgttatggattaaattataagaaattttttaagtca 75
Query: 724 agaatgaatatttgtgaacaatgtggatatcatttgaaaatgagtagttcagatagaatt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 agaatgaatatttgtgaacaatgtggatatcatttgaaaatgagtagttcagatagaatt 135
Query: 784 gaactttcgattgacctaggcacttggaatcctatggatgaagacatggtatctctggat 843
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 136 gaactttcgattgacctaggcacttgggatcctatggatgaagatatggtatctctggat 195
Query: 844 cccattgaatttcattcagaagaggaaccttataaagatcgtattgattcttatcnnnnn 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cccattgaatttcattcagaagaggaaccttataaagatcgtattgattcttatcaaaga 255
Query: 904 nngacaggattaaccgaggctgttcaaacaggcacaggtcaactaaacggtattcccgta 963
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 256 aagacaggattaaccgaggccgttcaaacaggcacaggtcaactaaacggcattcccgta 315
Query: 964 gcaattggggttatggattttcagtttatggggggtagtatgggatccgtagtaggggaa 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 316 gcaattggggttatggattttcagtttatggggggtagtatgggatccgtagtaggcgag 375
Query: 1024 aaaatcacccgtttgattgagtatgctaccaataaatttttacctcttattttagtgtgt 1083
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaatcactcgtttgatcgagtatgctaccaataaatttttacctcttattttagtgtgt 435
Query: 1084 gcttccggaggagcacgcatgcaagaaggaagtttgagcttgatgcaaatggctaaaata 1143
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcttccggaggagcgcgcatgcaagaaggaagtttgagcttgatgcaaatggctaaaata 495
Query: 1144 tcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaatccttaca 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaatccttaca 555
Query: 1204 tctcctacgaccggcggggtgacagctagttttggtatgttgggggatatcattattgct 1263
|||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 556 tctcctacaataggcggggtgacggctaattttggtatgttgggggatatcattattgct 615
Query: 1264 gaacctaacgcctatattgcatttgcgggtaaaagagtaattgaacaaacattgaataag 1323
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 616 gaacctaacgcctatattgcatttgtaggtaaaagagtaattgaacaaacattgaataag 675
Query: 1324 acagtacctgaaggttcacaatcggctgaatttttattccataagggtttattcgatcca 1383
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||
Sbjct: 676 acagtacctgaaggttcacaatcagccgaatttttattccataagggcttattcgattca 735
Query: 1384 atcgtaccacgtaatcctttaaaaggcgttttgaatgagttacttcagcttcacgatttc 1443
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 736 atcgtaccacgtaatccgttaaaaggcgttctgaatgagttacttcagctccacgatttc 795
Query: 1444 tttcctttgaatcataaatcaagtaga 1470
|||||||||||||||||||||||||||
Sbjct: 796 tttcctttgaatcataaatcaagtaga 822
>30185.m000928 conserved hypothetical protein
Length = 2073
Score = 692 bits (349), Expect = 0.0
Identities = 475/521 (91%), Gaps = 15/521 (2%)
Strand = Plus / Plus
Query: 435 ttggaataattacatcaatagttgtattgacaattatcttcgctctcaaatctgtattga 494
|||||| ||||||||||||||||| |||| || ||||||||| |||||| ||||||||||
Sbjct: 1209 ttggaagaattacatcaatagttgcattggcagttatcttcgttctcaagtctgtattga 1268
Query: 495 t---------ttaagtggtagtaacaattacagtgagagttacatttatagttacatttg 545
| |||| ||| ||| |||||||||| || |||| ||||||||||||||||||
Sbjct: 1269 tagttatattttaactggcagttacaattacagcgaaagttccatttatagttacatttg 1328
Query: 546 tggtgaaagtggaaatagtagtgaaagtgagagttccagtctaagaactagcacgaatgg 605
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 1329 tggtgaaagtggaaatagtaatgaaagccagagttccagtctaagaactagtacgaatgg 1388
Query: 606 tagcgatttaactataagagaaagttctaatgatctcgatata------actcaaaaata 659
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 1389 tagcgatttaactagaagagaaagttctaatgatctcgatataactataactcaaaaata 1448
Query: 660 caagcatttgtgggttcaatgcgaaaattgttatggattaaactataagaaatttttgaa 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1449 caagcatttgtgggttcaatgcgaaaattgttatggattaaattataagaaattttttaa 1508
Query: 720 gtcaagaatgaatatttgtgaacaatgtggatatcatttgaaaatgagtagttcagatag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 gtcaagaatgaatatttgtgaacaatgtggatatcatttgaaaatgagtagttcagatag 1568
Query: 780 aattgaactttcgattgacctaggcacttggaatcctatggatgaagacatggtatctct 839
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 1569 aattgaactttcgattgacctaggcacttgggatcctatggatgaagatatggtatctct 1628
Query: 840 ggatcccattgaatttcattcagaagaggaaccttataaagatcgtattgattcttatcn 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 ggatcccattgaatttcattcagaagaggaaccttataaagatcgtattgattcttatca 1688
Query: 900 nnnnnngacaggattaaccgaggctgttcaaacaggcacag 940
|||||||||||||||||| || ||||||||||||
Sbjct: 1689 aagaaagacaggattaaccgaggccattgaaacaggcacag 1729
Score = 295 bits (149), Expect = 4e-79
Identities = 173/181 (95%)
Strand = Plus / Plus
Query: 1291 ggtaaaagagtaattgaacaaacattgaataagacagtacctgaaggttcacaatcggct 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1888 ggtaaaagagtaattgaacaaacattgaataagacagtacctgaaggttcacaatcagcc 1947
Query: 1351 gaatttttattccataagggtttattcgatccaatcgtaccacgtaatcctttaaaaggc 1410
|||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1948 gaatttttattctataagggcttattcgattcaatcgtaccacgtaatccgttaaaaggc 2007
Query: 1411 gttttgaatgagttacttcagcttcacgatttctttcctttgaatcataaatcaagtaga 1470
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2008 gttctgaatgagttacttcagctccacgatttctttcctttgaatcataaatcaagtaga 2067
Query: 1471 g 1471
|
Sbjct: 2068 g 2068
Score = 254 bits (128), Expect = 1e-66
Identities = 155/164 (94%)
Strand = Plus / Plus
Query: 1077 agtgtgtgcttccggaggagcacgcatgcaagaaggaagtttgagcttgatgcaaatggc 1136
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1728 agtgtgtctttccggaggagtgcgcatgcaagaaggaagtttgagcttgatgcaaatggc 1787
Query: 1137 taaaatatcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaat 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 taaaatatcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaat 1847
Query: 1197 ccttacatctcctacgaccggcggggtgacagctagttttggta 1240
||||||||||||||| || |||| |||||| ||||||||||||
Sbjct: 1848 ccttacatctcctacaacaggcgaggtgacgactagttttggta 1891
>29917.m001954 conserved hypothetical protein
Length = 336
Score = 276 bits (139), Expect = 4e-73
Identities = 175/187 (93%)
Strand = Plus / Plus
Query: 1077 agtgtgtgcttccggaggagcacgcatgcaagaaggaagtttgagcttgatgcaaatggc 1136
|||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 123 agtgtgtgcttctggaggagtacgcatgcaagaaggaagtttgagcgtgatgcaaatggc 182
Query: 1137 taaaatatcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaat 1196
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 183 taagatatcttctactttatatgattctcaatcgaataaaaagttattttatgtctcaat 242
Query: 1197 ccttacatctcctacgaccggcggggtgacagctagttttggtatgttgggggatatcat 1256
|||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 243 tcttacacctcctacaacaggcggggtgacggctagttttggtatgttgggggatatcat 302
Query: 1257 tattgct 1263
|||||||
Sbjct: 303 tattgct 309
>29813.m001455 DNA-directed RNA polymerase beta chain, putative
Length = 492
Score = 127 bits (64), Expect = 2e-28
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1322 agacagtacctgaaggttcacaatcggctgaatttttattccataagggtttattcgatc 1381
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 409 agacagtacctgaaggttcacaatcagccgaatttttattccataagggcttattcgatt 468
Query: 1382 caatcgtaccacgtaatcctttaa 1405
||||||||||||||||||| ||||
Sbjct: 469 caatcgtaccacgtaatccgttaa 492