Jatropha Genome Database

JcSR479173f.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR479173f.10 + phase: 0 /partial
         (64 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004699 importin alpha, putative                                112   5e-26
30128.m008884 importin alpha, putative                                106   2e-24
29889.m003249 importin alpha, putative                                106   3e-24
30128.m008927 importin alpha, putative                                104   7e-24
29889.m003336 importin alpha, putative                                 82   5e-17

>30076.m004699 importin alpha, putative
          Length = 454

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 56/56 (100%)

Query: 7  MVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFPQL 62
          MVAGVWSE++N+QLEATTHFRKLLSIERSPPINEVVQ+GVVPRFIEFLAR+DFPQL
Sbjct: 1  MVAGVWSEDKNAQLEATTHFRKLLSIERSPPINEVVQSGVVPRFIEFLARDDFPQL 56


>30128.m008884 importin alpha, putative
          Length = 531

 Score =  106 bits (264), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 54/62 (87%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LE LP MVAGVWS++ N QLEATT FRKLLSIERSPPI EV+QAGVVPRF+EFL R DFP
Sbjct: 71  LEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFP 130

Query: 61  QL 62
           QL
Sbjct: 131 QL 132


>29889.m003249 importin alpha, putative
          Length = 488

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 56/62 (90%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LESLP MVAGVWS++++ QLEATT FRKLLSIERSPPI EV+Q+GVVPRF+EFL R DFP
Sbjct: 73  LESLPAMVAGVWSDDKSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFP 132

Query: 61  QL 62
           QL
Sbjct: 133 QL 134


>30128.m008927 importin alpha, putative
          Length = 450

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 56/62 (90%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LES+PVMV GVWS++  SQLEATT FRKLLSIERSPPI+EV++AGVVPRF+EFL R+D P
Sbjct: 74  LESIPVMVQGVWSDDPASQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLP 133

Query: 61  QL 62
           QL
Sbjct: 134 QL 135


>29889.m003336 importin alpha, putative
          Length = 453

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 44/56 (78%)

Query: 7  MVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFPQL 62
          MV GV S+  N QLEAT  FRKLLSIER PPI+EV++ GVVPRF+EFL R D PQL
Sbjct: 1  MVQGVLSDNPNLQLEATIQFRKLLSIERCPPIDEVIKVGVVPRFVEFLDRLDLPQL 56